4irn
From Proteopedia
(Difference between revisions)
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- | + | ==Crystal Structure of the Prolyl Acyl Carrier Protein Oxidase AnaB== | |
- | + | <StructureSection load='4irn' size='340' side='right' caption='[[4irn]], [[Resolution|resolution]] 2.80Å' scene=''> | |
- | + | == Structural highlights == | |
+ | <table><tr><td colspan='2'>[[4irn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Lyngbya_kuetzingii_utex_'b_1547' Lyngbya kuetzingii utex 'b 1547']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IRN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IRN FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">anaB, OSCI_4070008 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272129 Lyngbya kuetzingii UTEX 'B 1547'])</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4irn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4irn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4irn RCSB], [http://www.ebi.ac.uk/pdbsum/4irn PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Anatoxin-a and homoanatoxin-a are two potent cyanobacterial neurotoxins biosynthesized from L-proline by a short pathway involving polyketide synthases. Proline is first loaded onto AnaD, an acyl carrier protein, and prolyl-AnaD is then oxidized to 1-pyrroline-5-carboxyl-AnaD by a flavoprotein, AnaB. Three polyketide synthases then transform this imine into anatoxin-a or homoanatoxin-a. AnaB was crystallized in its holo form and its three-dimensional structure was determined by X-ray diffraction at 2.8 A resolution. AnaB is a homotetramer and its fold is very similar to that of the acyl-CoA dehydrogenases (ACADs). The active-site base of AnaB, Glu244, superimposed very well with that of human isovaleryl-CoA dehydrogenase, confirming previous site-directed mutagenesis experiments and mechanistic proposals. The substrate-binding site of AnaB is small and is likely to be fitted for the pyrrolidine ring of proline. However, in contrast to ACADs, which use an electron-transport protein, AnaB uses molecular oxygen as the electron acceptor, as in acyl-CoA oxidases. Calculation of the solvent-accessible surface area around the FAD in AnaB and in several homologues showed that it is significantly larger in AnaB than in its homologues. A protonated histidine near the FAD in AnaB is likely to participate in oxygen activation. Furthermore, an array of water molecules detected in the AnaB structure suggests a possible path for molecular oxygen towards FAD. This is consistent with AnaB being an oxidase rather than a dehydrogenase. The structure of AnaB is the first to be described for a prolyl-ACP oxidase and it will contribute to defining the structural basis responsible for oxygen reactivity in flavoenzymes. | ||
- | + | Structure of the prolyl-acyl carrier protein oxidase involved in the biosynthesis of the cyanotoxin anatoxin-a.,Moncoq K, Regad L, Mann S, Mejean A, Ploux O Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2340-52. doi:, 10.1107/S0907444913021859. Epub 2013 Nov 19. PMID:24311576<ref>PMID:24311576</ref> | |
- | + | ||
- | == | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
- | + | </div> | |
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Lyngbya kuetzingii utex 'b 1547']] | [[Category: Lyngbya kuetzingii utex 'b 1547']] | ||
- | [[Category: Mann, S | + | [[Category: Mann, S]] |
- | [[Category: Mejean, A | + | [[Category: Mejean, A]] |
- | [[Category: Moncoq, K | + | [[Category: Moncoq, K]] |
- | [[Category: Ploux, O | + | [[Category: Ploux, O]] |
- | [[Category: Regad, L | + | [[Category: Regad, L]] |
[[Category: Acyl coa dehydrogenase fold]] | [[Category: Acyl coa dehydrogenase fold]] | ||
[[Category: Acyl-acp oxidase]] | [[Category: Acyl-acp oxidase]] | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] |
Revision as of 18:55, 21 December 2014
Crystal Structure of the Prolyl Acyl Carrier Protein Oxidase AnaB
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