This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Sandbox Reserved 960

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{Sandbox_ESBS}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
+
[[Media:Example.ogg]]{{Sandbox_ESBS}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
==Crystal structure of a pheromone binding protein from Apis mellifera with a serendipitous ligand at pH 5.5==
==Crystal structure of a pheromone binding protein from Apis mellifera with a serendipitous ligand at pH 5.5==
<StructureSection load='3fe6' size='400' side='right'
<StructureSection load='3fe6' size='400' side='right'
Line 107: Line 107:
<scene name='60/604479/Acidic_residues/1'>acidic residues</scene>
<scene name='60/604479/Acidic_residues/1'>acidic residues</scene>
-
([[3ah7]])
 
Line 114: Line 113:
Autres versions de la protéine à pH variable
Autres versions de la protéine à pH variable
-
{{#tree:id=OrganizedByTopic|openlevels=0|
 
- 
-
*2Fe-2S containing ferredoxins
 
**[[3fe8]] The same protein in complex with a serendipitous ligand soaked at pH 4.0 <br />
**[[3fe8]] The same protein in complex with a serendipitous ligand soaked at pH 4.0 <br />
**[[3fe9]] The same protein in complex with a serendipitous ligand soaked at pH 7.0 <br />
**[[3fe9]] The same protein in complex with a serendipitous ligand soaked at pH 7.0 <br />
 +
 +
**[[3cdn]] The same protein in apo form soaked at pH 4.0 <br />
**[[2h8v]] The same protein in apo form at pH 5.5 <br />
**[[2h8v]] The same protein in apo form at pH 5.5 <br />
 +
**[[3cz2]] The same protein in apo form at pH 7.0 <br />
 +
**[[3bfa]] The same protein in complex with the QMP at pH 5.5 <br />
**[[3bfa]] The same protein in complex with the QMP at pH 5.5 <br />
**[[3bfb]] The same protein in complex with the 9-ODA at pH 5.5 <br />
**[[3bfb]] The same protein in complex with the 9-ODA at pH 5.5 <br />
**[[3bfh]] The same protein in complex with the HDOA at pH 5.5 <br />
**[[3bfh]] The same protein in complex with the HDOA at pH 5.5 <br />
**[[3bjh]] The same protein in complex with the nBBSA at pH 5.5 <br />
**[[3bjh]] The same protein in complex with the nBBSA at pH 5.5 <br />
-
**[[3cab]] The same protein in complex with the nBBSA soaked at pH 7.0 <br />
+
 
-
**[[3cdn]] The same protein in apo form soaked at pH 4.0 <br />
+
**[[3cyz]] The same protein in complex with the 9-ODA at pH 7.0 <br />
**[[3cyz]] The same protein in complex with the 9-ODA at pH 7.0 <br />
**[[3cz0]] The same protein in complex with the QMP at pH 7.0 <br />
**[[3cz0]] The same protein in complex with the QMP at pH 7.0 <br />
**[[3cz1]] The same protein in complex with the nBBSA at pH 7.0 <br />
**[[3cz1]] The same protein in complex with the nBBSA at pH 7.0 <br />
-
**[[3cz2]] The same protein in apo form at pH 7.0 <br />
+
**[[3cab]] The same protein in complex with the nBBSA soaked at pH 7.0 <br />
-
**[[3d73]] The mutant D35A of the same protein at pH 7.0 <br />
+
-
**[[3d74]] The mutant D35A of the same protein soaked at pH 5.5 <br />
+
-
**[[3d75]] The mutant D35N of the same protein at pH 5.5 <br />
+
-
**[[3d76]] The mutant D35N of the same protein soaked at pH 7.0 <br />
+
-
**[[3d77]] The mutant D35N of the same protein soaked at pH 4.0 <br />
+
-
**[[3d78]] The mutant D35N of the same protein at pH 7.0 <br />
+
-
}}
 
== Relevance ==
== Relevance ==

Revision as of 23:39, 21 December 2014

Media:Example.ogg

This Sandbox is Reserved from 15/11/2014, through 15/05/2015 for use in the course "Biomolecule" taught by Bruno Kieffer at the Strasbourg University. This reservation includes Sandbox Reserved 951 through Sandbox Reserved 975.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Crystal structure of a pheromone binding protein from Apis mellifera with a serendipitous ligand at pH 5.5

PDB ID 3fe6

Drag the structure with the mouse to rotate

References for further information on the pheromone binding protein from Apis mellifera

  1. Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Tegoni M, Cambillau C. Structural basis of the honey bee PBP pheromone and pH-induced conformational change. J Mol Biol. 2008 Jun 27;380(1):158-69. Epub 2008 Apr 27. PMID:18508083 doi:10.1016/j.jmb.2008.04.048
  2. Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Campanacci V, Tegoni M, Cambillau C. Queen bee pheromone binding protein pH-induced domain swapping favors pheromone release. J Mol Biol. 2009 Jul 31;390(5):981-90. Epub 2009 May 28. PMID:19481550 doi:10.1016/j.jmb.2009.05.067
  3. Han L, Zhang YJ, Zhang L, Cui X, Yu J, Zhang Z, Liu MS. Operating mechanism and molecular dynamics of pheromone-binding protein ASP1 as influenced by pH. PLoS One. 2014 Oct 22;9(10):e110565. doi: 10.1371/journal.pone.0110565., eCollection 2014. PMID:25337796 doi:http://dx.doi.org/10.1371/journal.pone.0110565
Personal tools