1t36
From Proteopedia
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| - | [[Image:1t36.gif|left|200px]] | + | [[Image:1t36.gif|left|200px]] |
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| - | '''Crystal structure of E. coli carbamoyl phosphate synthetase small subunit mutant C248D complexed with uridine 5'-monophosphate''' | + | {{Structure |
| + | |PDB= 1t36 |SIZE=350|CAPTION= <scene name='initialview01'>1t36</scene>, resolution 2.10Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ADP:ADENOSINE-5'-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ORN:ORNITHINE'>ORN</scene>, <scene name='pdbligand=NET:TETRAETHYLAMMONIUM+ION'>NET</scene> and <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Carbamoyl-phosphate_synthase_(glutamine-hydrolyzing) Carbamoyl-phosphate synthase (glutamine-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.5.5 6.3.5.5] | ||
| + | |GENE= CARB, PYRA, B0033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]), CARA, PYRA, B0032, Z0037, ECS0035 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
| + | }} | ||
| + | |||
| + | '''Crystal structure of E. coli carbamoyl phosphate synthetase small subunit mutant C248D complexed with uridine 5'-monophosphate''' | ||
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==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1T36 is a [ | + | 1T36 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T36 OCA]. |
==Reference== | ==Reference== | ||
| - | Long-range allosteric transitions in carbamoyl phosphate synthetase., Thoden JB, Huang X, Kim J, Raushel FM, Holden HM, Protein Sci. 2004 Sep;13(9):2398-405. PMID:[http:// | + | Long-range allosteric transitions in carbamoyl phosphate synthetase., Thoden JB, Huang X, Kim J, Raushel FM, Holden HM, Protein Sci. 2004 Sep;13(9):2398-405. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15322282 15322282] |
[[Category: Carbamoyl-phosphate synthase (glutamine-hydrolyzing)]] | [[Category: Carbamoyl-phosphate synthase (glutamine-hydrolyzing)]] | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
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[[Category: pyrimidine biosynthesis]] | [[Category: pyrimidine biosynthesis]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:13:11 2008'' |
Revision as of 12:13, 20 March 2008
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| , resolution 2.10Å | |||||||
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| Ligands: | , , , , , , and | ||||||
| Gene: | CARB, PYRA, B0033 (Escherichia coli), CARA, PYRA, B0032, Z0037, ECS0035 (Escherichia coli) | ||||||
| Activity: | Carbamoyl-phosphate synthase (glutamine-hydrolyzing), with EC number 6.3.5.5 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of E. coli carbamoyl phosphate synthetase small subunit mutant C248D complexed with uridine 5'-monophosphate
Overview
Carbamoyl phosphate synthetase plays a key role in both pyrimidine and arginine biosynthesis by catalyzing the production of carbamoyl phosphate from one molecule of bicarbonate, two molecules of MgATP, and one molecule of glutamine. The enzyme from Escherichia coli consists of two polypeptide chains referred to as the small and large subunits, which contain a total of three separate active sites that are connected by an intramolecular tunnel. The small subunit harbors one of these active sites and is responsible for the hydrolysis of glutamine to glutamate and ammonia. The large subunit binds the two required molecules of MgATP and is involved in assembling the final product. Compounds such as L-ornithine, UMP, and IMP allosterically regulate the enzyme. Here, we report the three-dimensional structure of a site-directed mutant protein of carbamoyl phosphate synthetase from E. coli, where Cys 248 in the small subunit was changed to an aspartate. This residue was targeted for a structural investigation because previous studies demonstrated that the partial glutaminase activity of the C248D mutant protein was increased 40-fold relative to the wild-type enzyme, whereas the formation of carbamoyl phosphate using glutamine as a nitrogen source was completely abolished. Remarkably, although Cys 248 in the small subunit is located at approximately 100 A from the allosteric binding pocket in the large subunit, the electron density map clearly revealed the presence of UMP, although this ligand was never included in the purification or crystallization schemes. The manner in which UMP binds to carbamoyl phosphate synthetase is described.
About this Structure
1T36 is a Protein complex structure of sequences from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Long-range allosteric transitions in carbamoyl phosphate synthetase., Thoden JB, Huang X, Kim J, Raushel FM, Holden HM, Protein Sci. 2004 Sep;13(9):2398-405. PMID:15322282
Page seeded by OCA on Thu Mar 20 14:13:11 2008
Categories: Carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Escherichia coli | Protein complex | Holden, H M. | Huang, X. | Raushel, F M. | Thoden, J B. | ADP | CL | K | MN | NET | ORN | PO4 | U | Arginine biosynthesis | Channeling | Pyrimidine biosynthesis
