1vee
From Proteopedia
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| - | [[Image:1vee.gif|left|200px]] | + | [[Image:1vee.gif|left|200px]] |
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| - | '''NMR structure of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana''' | + | {{Structure |
| + | |PDB= 1vee |SIZE=350|CAPTION= <scene name='initialview01'>1vee</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= RIKEN CDNA RAFL06-68-J04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana]) | ||
| + | }} | ||
| + | |||
| + | '''NMR structure of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 1VEE is a [ | + | 1VEE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEE OCA]. |
==Reference== | ==Reference== | ||
| - | Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana., Pantoja-Uceda D, Lopez-Mendez B, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S, Guntert P, Protein Sci. 2005 Jan;14(1):224-30. Epub 2004 Dec 2. PMID:[http:// | + | Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana., Pantoja-Uceda D, Lopez-Mendez B, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S, Guntert P, Protein Sci. 2005 Jan;14(1):224-30. Epub 2004 Dec 2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15576557 15576557] |
[[Category: Arabidopsis thaliana]] | [[Category: Arabidopsis thaliana]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: riken structural genomics/proteomics initiative]] | [[Category: riken structural genomics/proteomics initiative]] | ||
[[Category: rsgi]] | [[Category: rsgi]] | ||
| - | [[Category: structural | + | [[Category: structural genomic]] |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:44:26 2008'' |
Revision as of 12:44, 20 March 2008
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| Gene: | RIKEN CDNA RAFL06-68-J04 (Arabidopsis thaliana) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
NMR structure of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana
Overview
The three-dimensional structure of the rhodanese homology domain At4g01050(175-195) from Arabidopsis thaliana has been determined by solution nuclear magnetic resonance methods based on 3043 upper distance limits derived from NOE intensities measured in three-dimensional NOESY spectra. The structure shows a backbone root mean square deviation to the mean coordinates of 0.43 A for the structured residues 7-125. The fold consists of a central parallel beta-sheet with five strands in the order 1-5-4-2-3 and arranged in the conventional counterclockwise twist, and helices packing against each side of the beta-sheet. Comparison with the sequences of other proteins with a rhodanese homology domain in Arabidopsis thaliana indicated residues that could play an important role in the scaffold of the rhodanese homology domain. Finally, a three-dimensional structure comparison of the present noncatalytic rhodanese homology domain with the noncatalytic rhodanese domains of sulfurtransferases from other organisms discloses differences in the length and conformation of loops that could throw light on the role of the noncatalytic rhodanese domain in sulfurtransferases.
About this Structure
1VEE is a Single protein structure of sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA.
Reference
Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana., Pantoja-Uceda D, Lopez-Mendez B, Koshiba S, Inoue M, Kigawa T, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S, Guntert P, Protein Sci. 2005 Jan;14(1):224-30. Epub 2004 Dec 2. PMID:15576557
Page seeded by OCA on Thu Mar 20 14:44:26 2008
Categories: Arabidopsis thaliana | Single protein | Guntert, P. | Inoue, M. | Kigawa, T. | Koshiba, S. | Lopez-Mendez, B. | Pantoja-Uceda, D. | RSGI, RIKEN Structural Genomics/Proteomics Initiative. | Seki, M. | Shinozaki, K. | Shirouzu, M. | Tanaka, A. | Terada, T. | Yokoyama, S. | Hypothetical protein | Rhodanese domain | Riken structural genomics/proteomics initiative | Rsgi | Structural genomic
