3j3q
From Proteopedia
(Difference between revisions)
Line 2: | Line 2: | ||
<div style="background-color:yellow;" border="1" cellpadding="5">''Warning: this is a large structure, and loading might take a long time or not happen at all.''</div> | <div style="background-color:yellow;" border="1" cellpadding="5">''Warning: this is a large structure, and loading might take a long time or not happen at all.''</div> | ||
== Atomic-level structure of the entire HIV-1 capsid == | == Atomic-level structure of the entire HIV-1 capsid == | ||
- | <StructureSection load='3j3q-pdb-bundle1.pdb' size='340' side='right' caption='[[3j3q]] | + | <StructureSection load='3j3q-pdb-bundle1.pdb.gz' size='340' side='right' caption='[[3j3q]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | [[3j3q]] is a 1355 | + | [[3j3q]] is a 1355 chain structure, available for rendering on Proteopedia in 25 parts. |
+ | You may render each one of these parts individually by selecting here: <jmol><jmolMenu> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 1 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle1.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 1</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 2 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle2.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 2</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 3 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle3.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 3</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 4 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle4.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 4</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 5 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle5.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 5</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 6 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle6.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 6</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 7 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle7.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 7</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 8 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle8.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 8</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 9 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle9.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 9</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 10 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle10.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 10</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 11 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle11.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 11</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 12 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle12.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 12</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 13 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle13.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 13</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 14 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle14.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 14</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 15 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle15.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 15</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 16 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle16.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 16</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 17 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle17.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 17</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 18 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle18.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 18</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 19 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle19.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 19</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 20 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle20.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 20</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 21 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle21.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 21</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 22 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle22.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 22</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 23 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle23.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 23</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 24 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle24.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 24</text> | ||
+ | </item> | ||
+ | <item> | ||
+ | <script> | ||
+ | set echo off; set echo loading 50% 50%; set echo loading center; color echo [xffa500]; background echo translucent 0.7 gray; | ||
+ | echo Loading part 25 ...; refresh; | ||
+ | load models {0 0 1} /cgi-bin/getlateststructure?3j3q-pdb-bundle25.pdb.gz filter "*.CA,*.P|HETATM,![HOH]"; | ||
+ | script /wiki/extensions/Proteopedia/spt/initialview01.spt; | ||
+ | </script> | ||
+ | <text>render part 25</text> | ||
+ | </item> | ||
+ | </jmolMenu></jmol> | ||
+ | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == |
Revision as of 09:35, 23 December 2014
Warning: this is a large structure, and loading might take a long time or not happen at all.
Atomic-level structure of the entire HIV-1 capsid
|