1wzb
From Proteopedia
| Line 1: | Line 1: | ||
| - | [[Image:1wzb.gif|left|200px]] | + | [[Image:1wzb.gif|left|200px]] |
| - | + | ||
| - | '''Crystal structure of the collagen triple helix model [{HYP(R)-HYP(R)-GLY}10]3''' | + | {{Structure |
| + | |PDB= 1wzb |SIZE=350|CAPTION= <scene name='initialview01'>1wzb</scene>, resolution 1.50Å | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Crystal structure of the collagen triple helix model [{HYP(R)-HYP(R)-GLY}10]3''' | ||
| + | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
| - | 1WZB is a [ | + | 1WZB is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WZB OCA]. |
==Reference== | ==Reference== | ||
| - | Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10., Kawahara K, Nishi Y, Nakamura S, Uchiyama S, Nishiuchi Y, Nakazawa T, Ohkubo T, Kobayashi Y, Biochemistry. 2005 Dec 6;44(48):15812-22. PMID:[http:// | + | Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10., Kawahara K, Nishi Y, Nakamura S, Uchiyama S, Nishiuchi Y, Nakazawa T, Ohkubo T, Kobayashi Y, Biochemistry. 2005 Dec 6;44(48):15812-22. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16313184 16313184] |
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Kawahara, K.]] | [[Category: Kawahara, K.]] | ||
| Line 20: | Line 29: | ||
[[Category: Ohkubo, T.]] | [[Category: Ohkubo, T.]] | ||
[[Category: Uchiyama, S.]] | [[Category: Uchiyama, S.]] | ||
| - | [[Category: amino acid- | + | [[Category: amino acid-preference]] |
[[Category: collagen stability]] | [[Category: collagen stability]] | ||
[[Category: puckering]] | [[Category: puckering]] | ||
[[Category: triple helix]] | [[Category: triple helix]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:03:24 2008'' |
Revision as of 13:03, 20 March 2008
| |||||||
| , resolution 1.50Å | |||||||
|---|---|---|---|---|---|---|---|
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of the collagen triple helix model [{HYP(R)-HYP(R)-GLY}10]3
Overview
X-ray analysis has been carried out on a crystal of the collagen model peptide (Hyp(R)-Hyp(R)-Gly)10 [where Hyp(R) is 4(R)-hydroxyproline] with 1.5 A resolution. The triple-helical structure of (Hyp(R)-Hyp(R)-Gly)10 has the same helical parameters and Rich and Crick II hydrogen bond patterns as those of other collagen model peptides. However, our full-length crystal structure revealed that almost all consecutive Hyp(R) residues take the up-up pucker in contrast to putative down-up puckering propensities of other collagen model peptides. The unique feature of thermodynamic parameters associated with the conformational transition of this peptide from triple helix to single coil is that both enthalpy and entropy changes of the transition are much smaller than those of other model peptides such as (Pro-Pro-Gly)10 and (Pro-Hyp(R)-Gly)10. To corroborate the precise structural information including main- and side-chain dihedral angles and intra- and interwater bridge networks, we estimated the degrees of hydration by comparing molecular volumes observed experimentally in solution to those calculated ones from the crystal structure. The results showed that the degree of hydration of (Hyp(R)-Hyp(R)-Gly)10 is comparable to that of (Pro-Hyp(R)-Gly)10 in the triple-helical state, but the former was more highly hydrated than (Pro-Hyp(R)-Gly)10 in the single-coil state. Because hydration reduces the enthalpy due to the formation of a hydrogen bond with a water molecule and diminishes the entropy due to the restriction of water molecules surrounding a peptide molecule, we concluded that the high thermal stability of (Hyp(R)-Hyp(R)-Gly)10 is able to be described by its high hydration in the single-coil state.
About this Structure
1WZB is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10., Kawahara K, Nishi Y, Nakamura S, Uchiyama S, Nishiuchi Y, Nakazawa T, Ohkubo T, Kobayashi Y, Biochemistry. 2005 Dec 6;44(48):15812-22. PMID:16313184
Page seeded by OCA on Thu Mar 20 15:03:24 2008
