This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2vti
From Proteopedia
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2vti]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VTI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VTI FirstGlance]. <br> | <table><tr><td colspan='2'>[[2vti]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VTI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VTI FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LZ3:N-(4-SULFAMOYLPHENYL)-1H-INDAZOLE-3-CARBOXAMIDE'>LZ3</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LZ3:N-(4-SULFAMOYLPHENYL)-1H-INDAZOLE-3-CARBOXAMIDE'>LZ3</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1pye|1pye]], [[1h08|1h08]], [[2vth|2vth]], [[2b53|2b53]], [[1v1k|1v1k]], [[1okv|1okv]], [[1ke7|1ke7]], [[1h25|1h25]], [[1pxk|1pxk]], [[2bhh|2bhh]], [[2vta|2vta]], [[2uue|2uue]], [[1e1v|1e1v]], [[1gz8|1gz8]], [[1ol2|1ol2]], [[1h27|1h27]], [[1jsv|1jsv]], [[2b52|2b52]], [[1ke5|1ke5]], [[1fin|1fin]], [[2c5o|2c5o]], [[2c68|2c68]], [[2vtt|2vtt]], [[1p2a|1p2a]], [[2c4g|2c4g]], [[1w0x|1w0x]], [[1h1q|1h1q]], [[1pxo|1pxo]], [[1ke9|1ke9]], [[2a0c|2a0c]], [[1hck|1hck]], [[1jsu|1jsu]], [[1pxn|1pxn]], [[2uze|2uze]], [[2v0d|2v0d]], [[2vtm|2vtm]], [[1oiq|1oiq]], [[1h1r|1h1r]], [[2iw8|2iw8]], [[1hcl|1hcl]], [[1gih|1gih]], [[1pw2|1pw2]], [[2vtn|2vtn]], [[1jst|1jst]], [[1oiu|1oiu]], [[1pxm|1pxm]], [[1b38|1b38]], [[1fq1|1fq1]], [[1vyw|1vyw]], [[1h1p|1h1p]], [[2c69|2c69]], [[1urc|1urc]], [[1pxi|1pxi]], [[2c6i|2c6i]], [[1ykr|1ykr]], [[2c6k|2c6k]], [[2uzd|2uzd]], [[2c5y|2c5y]], [[1wcc|1wcc]], [[2j9m|2j9m]], [[1vyz|1vyz]], [[1jvp|1jvp]], [[1w98|1w98]], [[1pkd|1pkd]], [[1p5e|1p5e]], [[2vts|2vts]], [[2c5p|2c5p]], [[2uzn|2uzn]], [[2b54|2b54]], [[1ke6|1ke6]], [[1pxj|1pxj]], [[2uzl|2uzl]], [[2cci|2cci]], [[2bkz|2bkz]], [[2g9x|2g9x]], [[1y91|1y91]], [[2iw6|2iw6]], [[1gij|1gij]], [[1r78|1r78]], [[1h0v|1h0v]], [[2iw9|2iw9]], [[1w8c|1w8c]], [[1buh|1buh]], [[2bpm|2bpm]], [[2bts|2bts]], [[1fvv|1fvv]], [[1okw|1okw]], [[2vtp|2vtp]], [[2a4l|2a4l]], [[2c6t|2c6t]], [[1fvt|1fvt]], [[1qmz|1qmz]], [[1ogu|1ogu]], [[2b55|2b55]], [[1pf8|1pf8]], [[1h1s|1h1s]], [[2jgz|2jgz]], [[2c5v|2c5v]], [[2bhe|2bhe]], [[1urw|1urw]], [[1oiy|1oiy]], [[2c6l|2c6l]], [[1f5q|1f5q]], [[2c6o|2c6o]], [[2vtl|2vtl]], [[1ol1|1ol1]], [[2uzb|2uzb]], [[1h01|1h01]], [[1oir|1oir]], [[1oi9|1oi9]], [[2vtj|2vtj]], [[2cjm|2cjm]], [[2c5n|2c5n]], [[2c5x|2c5x]], [[2c6m|2c6m]], [[1oit|1oit]], [[2v22|2v22]], [[1gy3|1gy3]], [[1gii|1gii]], [[1di8|1di8]], [[1e9h|1e9h]], [[1dm2|1dm2]], [[2vto|2vto]], [[2uzo|2uzo]], [[1h24|1h24]], [[1h00|1h00]], [[2exm|2exm]], [[2clx|2clx]], [[1pxp|1pxp]], [[2cch|2cch]], [[1b39|1b39]], [[2btr|2btr]], [[1aq1|1aq1]], [[1h0w|1h0w]], [[1g5s|1g5s]], [[1ckp|1ckp]], [[1pxl|1pxl]], [[1ke8|1ke8]], [[1h28|1h28]], [[1h26|1h26]], [[2vtr|2vtr]], [[1h07|1h07]], [[1e1x|1e1x]], [[1y8y|1y8y]], [[2vtq|2vtq]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1pye|1pye]], [[1h08|1h08]], [[2vth|2vth]], [[2b53|2b53]], [[1v1k|1v1k]], [[1okv|1okv]], [[1ke7|1ke7]], [[1h25|1h25]], [[1pxk|1pxk]], [[2bhh|2bhh]], [[2vta|2vta]], [[2uue|2uue]], [[1e1v|1e1v]], [[1gz8|1gz8]], [[1ol2|1ol2]], [[1h27|1h27]], [[1jsv|1jsv]], [[2b52|2b52]], [[1ke5|1ke5]], [[1fin|1fin]], [[2c5o|2c5o]], [[2c68|2c68]], [[2vtt|2vtt]], [[1p2a|1p2a]], [[2c4g|2c4g]], [[1w0x|1w0x]], [[1h1q|1h1q]], [[1pxo|1pxo]], [[1ke9|1ke9]], [[2a0c|2a0c]], [[1hck|1hck]], [[1jsu|1jsu]], [[1pxn|1pxn]], [[2uze|2uze]], [[2v0d|2v0d]], [[2vtm|2vtm]], [[1oiq|1oiq]], [[1h1r|1h1r]], [[2iw8|2iw8]], [[1hcl|1hcl]], [[1gih|1gih]], [[1pw2|1pw2]], [[2vtn|2vtn]], [[1jst|1jst]], [[1oiu|1oiu]], [[1pxm|1pxm]], [[1b38|1b38]], [[1fq1|1fq1]], [[1vyw|1vyw]], [[1h1p|1h1p]], [[2c69|2c69]], [[1urc|1urc]], [[1pxi|1pxi]], [[2c6i|2c6i]], [[1ykr|1ykr]], [[2c6k|2c6k]], [[2uzd|2uzd]], [[2c5y|2c5y]], [[1wcc|1wcc]], [[2j9m|2j9m]], [[1vyz|1vyz]], [[1jvp|1jvp]], [[1w98|1w98]], [[1pkd|1pkd]], [[1p5e|1p5e]], [[2vts|2vts]], [[2c5p|2c5p]], [[2uzn|2uzn]], [[2b54|2b54]], [[1ke6|1ke6]], [[1pxj|1pxj]], [[2uzl|2uzl]], [[2cci|2cci]], [[2bkz|2bkz]], [[2g9x|2g9x]], [[1y91|1y91]], [[2iw6|2iw6]], [[1gij|1gij]], [[1r78|1r78]], [[1h0v|1h0v]], [[2iw9|2iw9]], [[1w8c|1w8c]], [[1buh|1buh]], [[2bpm|2bpm]], [[2bts|2bts]], [[1fvv|1fvv]], [[1okw|1okw]], [[2vtp|2vtp]], [[2a4l|2a4l]], [[2c6t|2c6t]], [[1fvt|1fvt]], [[1qmz|1qmz]], [[1ogu|1ogu]], [[2b55|2b55]], [[1pf8|1pf8]], [[1h1s|1h1s]], [[2jgz|2jgz]], [[2c5v|2c5v]], [[2bhe|2bhe]], [[1urw|1urw]], [[1oiy|1oiy]], [[2c6l|2c6l]], [[1f5q|1f5q]], [[2c6o|2c6o]], [[2vtl|2vtl]], [[1ol1|1ol1]], [[2uzb|2uzb]], [[1h01|1h01]], [[1oir|1oir]], [[1oi9|1oi9]], [[2vtj|2vtj]], [[2cjm|2cjm]], [[2c5n|2c5n]], [[2c5x|2c5x]], [[2c6m|2c6m]], [[1oit|1oit]], [[2v22|2v22]], [[1gy3|1gy3]], [[1gii|1gii]], [[1di8|1di8]], [[1e9h|1e9h]], [[1dm2|1dm2]], [[2vto|2vto]], [[2uzo|2uzo]], [[1h24|1h24]], [[1h00|1h00]], [[2exm|2exm]], [[2clx|2clx]], [[1pxp|1pxp]], [[2cch|2cch]], [[1b39|1b39]], [[2btr|2btr]], [[1aq1|1aq1]], [[1h0w|1h0w]], [[1g5s|1g5s]], [[1ckp|1ckp]], [[1pxl|1pxl]], [[1ke8|1ke8]], [[1h28|1h28]], [[1h26|1h26]], [[2vtr|2vtr]], [[1h07|1h07]], [[1e1x|1e1x]], [[1y8y|1y8y]], [[2vtq|2vtq]]</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vti OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vti RCSB], [http://www.ebi.ac.uk/pdbsum/2vti PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vti FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vti OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vti RCSB], [http://www.ebi.ac.uk/pdbsum/2vti PDBsum]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/CDK2_HUMAN CDK2_HUMAN]] Serine/threonine-protein kinase involved in the control of the cell cycle; essential for meiosis, but dispensable for mitosis. Phosphorylates CTNNB1, USP37, p53/TP53, NPM1, CDK7, RB1, BRCA2, MYC, NPAT, EZH2. Interacts with cyclins A, B1, B3, D, or E. Triggers duplication of centrosomes and DNA. Acts at the G1-S transition to promote the E2F transcriptional program and the initiation of DNA synthesis, and modulates G2 progression; controls the timing of entry into mitosis/meiosis by controlling the subsequent activation of cyclin B/CDK1 by phosphorylation, and coordinates the activation of cyclin B/CDK1 at the centrosome and in the nucleus. Crucial role in orchestrating a fine balance between cellular proliferation, cell death, and DNA repair in human embryonic stem cells (hESCs). Activity of CDK2 is maximal during S phase and G2; activated by interaction with cyclin E during the early stages of DNA synthesis to permit G1-S transition, and subsequently activated by cyclin A2 (cyclin A1 in germ cells) during the late stages of DNA replication to drive the transition from S phase to mitosis, the G2 phase. EZH2 phosphorylation promotes H3K27me3 maintenance and epigenetic gene silencing. Phosphorylates CABLES1 (By similarity). Cyclin E/CDK2 prevents oxidative stress-mediated Ras-induced senescence by phosphorylating MYC. Involved in G1-S phase DNA damage checkpoint that prevents cells with damaged DNA from initiating mitosis; regulates homologous recombination-dependent repair by phosphorylating BRCA2, this phosphorylation is low in S phase when recombination is active, but increases as cells progress towards mitosis. In response to DNA damage, double-strand break repair by homologous recombination a reduction of CDK2-mediated BRCA2 phosphorylation. Phosphorylation of RB1 disturbs its interaction with E2F1. NPM1 phosphorylation by cyclin E/CDK2 promotes its dissociates from unduplicated centrosomes, thus initiating centrosome duplication. Cyclin E/CDK2-mediated phosphorylation of NPAT at G1-S transition and until prophase stimulates the NPAT-mediated activation of histone gene transcription during S phase. Required for vitamin D-mediated growth inhibition by being itself inactivated. Involved in the nitric oxide- (NO) mediated signaling in a nitrosylation/activation-dependent manner. USP37 is activated by phosphorylation and thus triggers G1-S transition. CTNNB1 phosphorylation regulates insulin internalization.<ref>PMID:10499802</ref> <ref>PMID:11051553</ref> <ref>PMID:10995386</ref> <ref>PMID:10995387</ref> <ref>PMID:10884347</ref> <ref>PMID:11113184</ref> <ref>PMID:15800615</ref> <ref>PMID:18372919</ref> <ref>PMID:20147522</ref> <ref>PMID:20079829</ref> <ref>PMID:20935635</ref> <ref>PMID:20195506</ref> <ref>PMID:19966300</ref> <ref>PMID:21262353</ref> <ref>PMID:21596315</ref> <ref>PMID:21319273</ref> <ref>PMID:17495531</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 33: | Line 35: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: Berdini, V | + | [[Category: Berdini, V]] |
| - | [[Category: Boulstridge, J A | + | [[Category: Boulstridge, J A]] |
| - | [[Category: Brien, M A.O | + | [[Category: Brien, M A.O]] |
| - | [[Category: Carr, M G | + | [[Category: Carr, M G]] |
| - | [[Category: Cross, D M | + | [[Category: Cross, D M]] |
| - | [[Category: Danillon, D | + | [[Category: Danillon, D]] |
| - | [[Category: Davis, D J | + | [[Category: Davis, D J]] |
| - | [[Category: Devine, L A | + | [[Category: Devine, L A]] |
| - | [[Category: Early, T R | + | [[Category: Early, T R]] |
| - | [[Category: Feltell, R E | + | [[Category: Feltell, R E]] |
| - | [[Category: Lewis, E J | + | [[Category: Lewis, E J]] |
| - | [[Category: Mcmenamin, R L | + | [[Category: Mcmenamin, R L]] |
| - | [[Category: Navarro, E F | + | [[Category: Navarro, E F]] |
| - | [[Category: Reilly, M O | + | [[Category: Reilly, M O]] |
| - | [[Category: Reule, M | + | [[Category: Reule, M]] |
| - | [[Category: Saxty, G | + | [[Category: Saxty, G]] |
| - | [[Category: Seavers, L C.A | + | [[Category: Seavers, L C.A]] |
| - | [[Category: Smith, D | + | [[Category: Smith, D]] |
| - | [[Category: Squires, M S | + | [[Category: Squires, M S]] |
| - | [[Category: Trewartha, G | + | [[Category: Trewartha, G]] |
| - | [[Category: Walker, M T | + | [[Category: Walker, M T]] |
| - | [[Category: Woodhead, A J | + | [[Category: Woodhead, A J]] |
| - | [[Category: Woolford, A J | + | [[Category: Woolford, A J]] |
| - | [[Category: Wyatt, P G | + | [[Category: Wyatt, P G]] |
[[Category: Cell cycle]] | [[Category: Cell cycle]] | ||
[[Category: Mitosis]] | [[Category: Mitosis]] | ||
[[Category: Serine/threonine protein kinase]] | [[Category: Serine/threonine protein kinase]] | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
Revision as of 14:30, 24 December 2014
IDENTIFICATION OF N-(4-PIPERIDINYL)-4-(2,6-DICHLOROBENZOYLAMINO)-1H-PYRAZOLE-3-CARBOXAMIDE (AT7519), A NOVEL CYCLIN DEPENDENT KINASE INHIBITOR USING FRAGMENT-BASED X-RAY CRYSTALLOGRAPHY AND STRUCTURE BASED DRUG DESIGN.
| |||||||||||
Categories: Homo sapiens | Berdini, V | Boulstridge, J A | Brien, M A.O | Carr, M G | Cross, D M | Danillon, D | Davis, D J | Devine, L A | Early, T R | Feltell, R E | Lewis, E J | Mcmenamin, R L | Navarro, E F | Reilly, M O | Reule, M | Saxty, G | Seavers, L C.A | Smith, D | Squires, M S | Trewartha, G | Walker, M T | Woodhead, A J | Woolford, A J | Wyatt, P G | Cell cycle | Mitosis | Serine/threonine protein kinase | Transferase

