1uhr
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1uhr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UHR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UHR FirstGlance]. <br> | <table><tr><td colspan='2'>[[1uhr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UHR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UHR FirstGlance]. <br> | ||
- | </td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 0710008A09 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])</td></tr> | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 0710008A09 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])</td></tr> |
- | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uhr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uhr RCSB], [http://www.ebi.ac.uk/pdbsum/1uhr PDBsum], [http://www.topsan.org/Proteins/RSGI/1uhr TOPSAN]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uhr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uhr RCSB], [http://www.ebi.ac.uk/pdbsum/1uhr PDBsum], [http://www.topsan.org/Proteins/RSGI/1uhr TOPSAN]</span></td></tr> |
- | <table> | + | </table> |
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/SMRD1_MOUSE SMRD1_MOUSE]] Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.<ref>PMID:17640523</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Mus musculus]] | [[Category: Mus musculus]] | ||
- | [[Category: Aoki, M | + | [[Category: Aoki, M]] |
- | [[Category: Arakawa, T | + | [[Category: Arakawa, T]] |
- | [[Category: Carninci, P | + | [[Category: Carninci, P]] |
- | [[Category: Hayashizaki, Y | + | [[Category: Hayashizaki, Y]] |
- | [[Category: Hirota, H | + | [[Category: Hirota, H]] |
- | [[Category: Inoue, M | + | [[Category: Inoue, M]] |
- | [[Category: Kawai, J | + | [[Category: Kawai, J]] |
- | [[Category: Kigawa, T | + | [[Category: Kigawa, T]] |
- | [[Category: Koshiba, S | + | [[Category: Koshiba, S]] |
- | [[Category: Matsuda, T | + | [[Category: Matsuda, T]] |
- | [[Category: Nameki, N | + | [[Category: Nameki, N]] |
- | [[Category: Osanai, T | + | [[Category: Osanai, T]] |
- | [[Category: | + | [[Category: Structural genomic]] |
- | [[Category: Saito, K | + | [[Category: Saito, K]] |
- | [[Category: Seki, E | + | [[Category: Seki, E]] |
- | [[Category: Shirouzu, M | + | [[Category: Shirouzu, M]] |
- | [[Category: Tanaka, A | + | [[Category: Tanaka, A]] |
- | [[Category: Terada, T | + | [[Category: Terada, T]] |
- | [[Category: Yabuki, T | + | [[Category: Yabuki, T]] |
- | [[Category: Yamada, K | + | [[Category: Yamada, K]] |
- | [[Category: Yokoyama, S | + | [[Category: Yokoyama, S]] |
- | [[Category: Yoshida, M | + | [[Category: Yoshida, M]] |
[[Category: Chromatin remodeling]] | [[Category: Chromatin remodeling]] | ||
[[Category: Gene regulation]] | [[Category: Gene regulation]] | ||
- | [[Category: Riken structural genomics/proteomics initiative]] | ||
[[Category: Rsgi]] | [[Category: Rsgi]] | ||
- | [[Category: Structural genomic]] | ||
[[Category: Swi/snf]] | [[Category: Swi/snf]] |
Revision as of 16:30, 24 December 2014
Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
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Categories: Mus musculus | Aoki, M | Arakawa, T | Carninci, P | Hayashizaki, Y | Hirota, H | Inoue, M | Kawai, J | Kigawa, T | Koshiba, S | Matsuda, T | Nameki, N | Osanai, T | Structural genomic | Saito, K | Seki, E | Shirouzu, M | Tanaka, A | Terada, T | Yabuki, T | Yamada, K | Yokoyama, S | Yoshida, M | Chromatin remodeling | Gene regulation | Rsgi | Swi/snf