4kep
From Proteopedia
(Difference between revisions)
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| - | + | ==Crystal structure of 4-pyridoxolactonase, wild-type== | |
| - | === | + | <StructureSection load='4kep' size='340' side='right' caption='[[4kep]], [[Resolution|resolution]] 1.83Å' scene=''> |
| - | + | == Structural highlights == | |
| - | ==Function== | + | <table><tr><td colspan='2'>[[4kep]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mesorhizobium_loti Mesorhizobium loti]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3aj0 3aj0]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KEP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KEP FirstGlance]. <br> |
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3aj3|3aj3]], [[4keq|4keq]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mlr6805 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266835 Mesorhizobium loti])</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-pyridoxolactonase 4-pyridoxolactonase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.27 3.1.1.27] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kep OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kep RCSB], [http://www.ebi.ac.uk/pdbsum/4kep PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
[[http://www.uniprot.org/uniprot/PDLA_RHILO PDLA_RHILO]] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Hydrolyzes 4-pyridoxolactone to 4-pyridoxic acid. Has lower activity toward N-hexanoyl-D,L-homoserine lactone, but is not active toward 5-pyridoxolactone and gamma-butyrolactone. | [[http://www.uniprot.org/uniprot/PDLA_RHILO PDLA_RHILO]] Involved in the degradation of pyridoxine or pyridoxamine (free, phosphate-unbound, forms of vitamin B6). Hydrolyzes 4-pyridoxolactone to 4-pyridoxic acid. Has lower activity toward N-hexanoyl-D,L-homoserine lactone, but is not active toward 5-pyridoxolactone and gamma-butyrolactone. | ||
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | ||
[[Category: 4-pyridoxolactonase]] | [[Category: 4-pyridoxolactonase]] | ||
| - | [[Category: Baba, S | + | [[Category: Mesorhizobium loti]] |
| - | [[Category: Kobayashi, J | + | [[Category: Baba, S]] |
| - | [[Category: Mikami, B | + | [[Category: Kobayashi, J]] |
| - | [[Category: Mizutani, K | + | [[Category: Mikami, B]] |
| - | [[Category: Takahashi, N | + | [[Category: Mizutani, K]] |
| - | [[Category: Yagi, T | + | [[Category: Takahashi, N]] |
| - | [[Category: Yoshikane, Y | + | [[Category: Yagi, T]] |
| + | [[Category: Yoshikane, Y]] | ||
[[Category: Alpha-beta/beta-alpha fold]] | [[Category: Alpha-beta/beta-alpha fold]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Lactone]] | [[Category: Lactone]] | ||
Revision as of 18:56, 24 December 2014
Crystal structure of 4-pyridoxolactonase, wild-type
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