4b77

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{{STRUCTURE_4b77| PDB=4b77 | SCENE= }}
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==Aminoimidazoles as BACE-1 Inhibitors: From De Novo Design to Ab- lowering in Brain==
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===Aminoimidazoles as BACE-1 Inhibitors: From De Novo Design to Ab- lowering in Brain===
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<StructureSection load='4b77' size='340' side='right' caption='[[4b77]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23126626}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4b77]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B77 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B77 FirstGlance]. <br>
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==Function==
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=54M:(5R)-5-(4-METHOXYPHENYL)-5-(3-PYRIMIDIN-5-YLPHENYL)-3,4-DIHYDROPYRROL-2-AMINE'>54M</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1fkn|1fkn]], [[1m4h|1m4h]], [[1py1|1py1]], [[1sgz|1sgz]], [[1tqf|1tqf]], [[1ujj|1ujj]], [[1ujk|1ujk]], [[1w50|1w50]], [[1w51|1w51]], [[1xn2|1xn2]], [[1xn3|1xn3]], [[1xs7|1xs7]], [[1ym2|1ym2]], [[1ym4|1ym4]], [[2b8l|2b8l]], [[2b8v|2b8v]], [[2fdp|2fdp]], [[2va5|2va5]], [[2va6|2va6]], [[2va7|2va7]], [[2vie|2vie]], [[2vij|2vij]], [[2viy|2viy]], [[2viz|2viz]], [[2vj6|2vj6]], [[2vj7|2vj7]], [[2vj9|2vj9]], [[2vkm|2vkm]], [[2vnm|2vnm]], [[2vnn|2vnn]], [[2wez|2wez]], [[2wf0|2wf0]], [[2wf1|2wf1]], [[2wf2|2wf2]], [[2wf3|2wf3]], [[2wf4|2wf4]], [[2wjo|2wjo]], [[2xfi|2xfi]], [[2xfj|2xfj]], [[2xfk|2xfk]], [[4acu|4acu]], [[4acx|4acx]], [[4azy|4azy]], [[4b00|4b00]], [[4b05|4b05]], [[4b0q|4b0q]], [[4b1c|4b1c]], [[4b1d|4b1d]], [[4b1e|4b1e]], [[4b70|4b70]], [[4b72|4b72]], [[4b78|4b78]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Memapsin_2 Memapsin 2], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.46 3.4.23.46] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b77 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4b77 RCSB], [http://www.ebi.ac.uk/pdbsum/4b77 PDBsum]</span></td></tr>
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</table>
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== Function ==
[[http://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN]] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
[[http://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN]] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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By use of iterative design aided by predictive models for target affinity, brain permeability, and hERG activity, novel and diverse compounds based on cyclic amidine and guanidine cores were synthesized with the goal of finding BACE-1 inhibitors as a treatment for Alzheimer's disease. Since synthesis feasibility had low priority in the design of the cores, an extensive synthesis effort was needed to make the relevant compounds. Syntheses of these compounds are reported, together with physicochemical properties and structure-activity relationships based on in vitro data. Four crystal structures of diverse amidines binding in the active site are deposited and discussed. Inhibitors of BACE-1 with 3 muM to 32 nM potencies in cells are shown, together with data on in vivo brain exposure levels for four compounds. The results presented show the importance of the core structure for the profile of the final compounds.
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Core Refinement toward Permeable beta-Secretase (BACE-1) Inhibitors with Low hERG Activity.,Ginman T, Viklund J, Malmstrom J, Blid J, Emond R, Forsblom R, Johansson A, Kers A, Lake F, Sehgelmeble F, Sterky KJ, Bergh M, Lindgren A, Johansson P, Jeppsson F, Falting J, Gravenfors Y, Rahm F J Med Chem. 2013 Jun 13;56(11):4181-205. doi: 10.1021/jm3011349. Epub 2013 May, 20. PMID:23126626<ref>PMID:23126626</ref>
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[4b77]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B77 OCA].
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</div>
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==Reference==
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==See Also==
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<ref group="xtra">PMID:023126626</ref><references group="xtra"/><references/>
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*[[Beta secretase|Beta secretase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Memapsin 2]]
[[Category: Memapsin 2]]
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[[Category: Berg, S.]]
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[[Category: Berg, S]]
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[[Category: Blid, J.]]
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[[Category: Blid, J]]
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[[Category: Eketjall, S.]]
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[[Category: Eketjall, S]]
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[[Category: Falting, J.]]
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[[Category: Falting, J]]
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[[Category: Ginman, T.]]
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[[Category: Ginman, T]]
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[[Category: Gravenfors, Y.]]
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[[Category: Gravenfors, Y]]
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[[Category: Janson, J.]]
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[[Category: Janson, J]]
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[[Category: Jeppsson, F.]]
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[[Category: Jeppsson, F]]
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[[Category: Johansson, P.]]
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[[Category: Johansson, P]]
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[[Category: Karlstrom, S.]]
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[[Category: Karlstrom, S]]
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[[Category: Kieseritzky, F.]]
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[[Category: Kieseritzky, F]]
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[[Category: Kihlstrom, J.]]
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[[Category: Kihlstrom, J]]
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[[Category: Kolmodin, K.]]
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[[Category: Kolmodin, K]]
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[[Category: Lindstrom, J.]]
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[[Category: Lindstrom, J]]
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[[Category: Olsson, L.]]
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[[Category: Olsson, L]]
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[[Category: Rahm, F.]]
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[[Category: Rahm, F]]
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[[Category: Slivo, C.]]
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[[Category: Slivo, C]]
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[[Category: Stromberg, K.]]
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[[Category: Stromberg, K]]
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[[Category: Swahn, B.]]
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[[Category: Swahn, B]]
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[[Category: Viklund, J.]]
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[[Category: Viklund, J]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Lead generation]]
[[Category: Lead generation]]
[[Category: Structure-based drug design]]
[[Category: Structure-based drug design]]

Revision as of 22:46, 24 December 2014

Aminoimidazoles as BACE-1 Inhibitors: From De Novo Design to Ab- lowering in Brain

4b77, resolution 1.80Å

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