2bb8
From Proteopedia
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| - | [[Image:2bb8.gif|left|200px]] | + | [[Image:2bb8.gif|left|200px]] |
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| - | '''N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, MINIMIZED AVERAGE STRUCTURE''' | + | {{Structure |
| + | |PDB= 2bb8 |SIZE=350|CAPTION= <scene name='initialview01'>2bb8</scene> | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
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| + | '''N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, MINIMIZED AVERAGE STRUCTURE''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2BB8 is a [ | + | 2BB8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BB8 OCA]. |
==Reference== | ==Reference== | ||
| - | Site-specific DNA binding using a variation of the double stranded RNA binding motif., Connolly KM, Wojciak JM, Clubb RT, Nat Struct Biol. 1998 Jul;5(7):546-50. PMID:[http:// | + | Site-specific DNA binding using a variation of the double stranded RNA binding motif., Connolly KM, Wojciak JM, Clubb RT, Nat Struct Biol. 1998 Jul;5(7):546-50. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9665166 9665166] |
[[Category: Enterococcus faecalis]] | [[Category: Enterococcus faecalis]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: transposition]] | [[Category: transposition]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:59:38 2008'' |
Revision as of 13:59, 20 March 2008
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, MINIMIZED AVERAGE STRUCTURE
Overview
The integrase family of site-specific recombinases catalyze a diverse array of DNA rearrangements in archaebacteria, eubacteria and yeast. The solution structure of the DNA binding domain of the integrase protein from the conjugative transposon Tn916 has been determined using NMR spectroscopy. The structure provides the first insights into distal site DNA binding by a site-specific integrase and reveals that the N-terminal domain is structurally similar to the double stranded RNA binding domain (dsRBD). The results of chemical shift mapping experiments suggest that the integrase protein interacts with DNA using residues located on the face of its three stranded beta-sheet. This surface differs from the proposed RNA binding surface in dsRBDs, suggesting that different surfaces on the same protein fold can be used to bind DNA and RNA.
About this Structure
2BB8 is a Single protein structure of sequence from Enterococcus faecalis. Full crystallographic information is available from OCA.
Reference
Site-specific DNA binding using a variation of the double stranded RNA binding motif., Connolly KM, Wojciak JM, Clubb RT, Nat Struct Biol. 1998 Jul;5(7):546-50. PMID:9665166
Page seeded by OCA on Thu Mar 20 15:59:38 2008
