4efr

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[[Image:4efr.png|left|200px]]
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==Bombyx mori lipoprotein 7 (crystal form II) at 2.50 A resolution==
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<StructureSection load='4efr' size='340' side='right' caption='[[4efr]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4efr]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EFR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EFR FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=0AF:7-HYDROXY-L-TRYPTOPHAN'>0AF</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3pub|3pub]], [[4efp|4efp]], [[4efq|4efq]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4efr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4efr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4efr RCSB], [http://www.ebi.ac.uk/pdbsum/4efr PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Three crystal structures of a lipoprotein (Bmlp7) of unknown function, a member of the 30 kDa lipoprotein family from mulberry silkworm (Bombyx mori L.) haemolymph, have been determined. The 1.33 A resolution structure is an excellent example of how a precise crystallographic study can contribute to protein identification. The correct sequence of this haemolymph-isolated protein was assigned thanks to superb-quality electron-density maps. Two unexpected cadmium cations were found in this crystal structure [Bmlp7-I(Cd)] and their presence may be connected to a detoxification mechanism in this insect. For a comparison of the metal-binding sites, the crystal structure of a platinum complex (Bmlp7-Pt) was also solved at 1.94 A resolution. The third (2.50 A resolution) structure, of the native protein harvested in a different season (Bmlp7-II), corresponds to a different polymorph with an altered pattern of intermolecular interactions and with a total absence of cadmium ions and highlights the possible involvement of Bmlp7 in the response to environmental pollution. The N-terminal domain of Bmlp7 has a fold resembling a clockwise spiral created by six helices and can be classified as a VHS domain. The C-terminal domain is folded as a beta-trefoil. The biological function of Bmlp7 is unknown, but its structural homology to sugar-binding proteins suggests that, in analogy to other 30 kDa haemolymph lipoproteins, it could play a role as an anti-apoptotic factor or function in the immune response of the insect to fungal infections.
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{{STRUCTURE_4efr| PDB=4efr | SCENE= }}
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High-resolution structure of Bombyx mori lipoprotein 7: crystallographic determination of the identity of the protein and its potential role in detoxification.,Pietrzyk AJ, Panjikar S, Bujacz A, Mueller-Dieckmann J, Lochynska M, Jaskolski M, Bujacz G Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1140-51. doi:, 10.1107/S0907444912021555. Epub 2012 Aug 18. PMID:22948915<ref>PMID:22948915</ref>
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===Bombyx mori lipoprotein 7 (crystal form II) at 2.50 A resolution===
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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{{ABSTRACT_PUBMED_22948915}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[4efr]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EFR OCA].
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</StructureSection>
[[Category: Bombyx mori]]
[[Category: Bombyx mori]]
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[[Category: Bujacz, A.]]
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[[Category: Bujacz, A]]
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[[Category: Bujacz, G.]]
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[[Category: Bujacz, G]]
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[[Category: Jaskolski, M.]]
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[[Category: Jaskolski, M]]
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[[Category: Mueller-Dieckmann, J.]]
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[[Category: Mueller-Dieckmann, J]]
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[[Category: Panjikar, S.]]
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[[Category: Panjikar, S]]
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[[Category: Pietrzyk, A J.]]
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[[Category: Pietrzyk, A J]]
[[Category: Beta-trefoil domain]]
[[Category: Beta-trefoil domain]]
[[Category: Unknown function]]
[[Category: Unknown function]]
[[Category: Vhs domain]]
[[Category: Vhs domain]]

Revision as of 03:57, 25 December 2014

Bombyx mori lipoprotein 7 (crystal form II) at 2.50 A resolution

4efr, resolution 2.50Å

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