3ixy

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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3ixy]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IXY FirstGlance]. <br>
<table><tr><td colspan='2'>[[3ixy]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IXY FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ixy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ixy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ixy RCSB], [http://www.ebi.ac.uk/pdbsum/3ixy PDBsum]</span></td></tr>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ixy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ixy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ixy RCSB], [http://www.ebi.ac.uk/pdbsum/3ixy PDBsum]</span></td></tr>
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== Function ==
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[[http://www.uniprot.org/uniprot/POLG_DEN2U POLG_DEN2U]] prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response. Soluble and membrane-associated NS1 may activate human complement and induce host vascular leakage. This effect might explain the clinical manifestations of dengue hemorrhagic fever and dengue shock syndrome (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Dengue virus 2]]
[[Category: Dengue virus 2]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Cherrier, M V.]]
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[[Category: Cherrier, M V]]
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[[Category: Chipman, P R.]]
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[[Category: Chipman, P R]]
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[[Category: Diamond, M S.]]
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[[Category: Diamond, M S]]
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[[Category: Fremont, D H.]]
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[[Category: Fremont, D H]]
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[[Category: Holdaway, H A.]]
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[[Category: Holdaway, H A]]
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[[Category: Kaufmann, B.]]
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[[Category: Kaufmann, B]]
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[[Category: Kostyuchenko, V A.]]
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[[Category: Kostyuchenko, V A]]
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[[Category: Kuhn, R J.]]
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[[Category: Kuhn, R J]]
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[[Category: Lok, S M.]]
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[[Category: Lok, S M]]
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[[Category: Nelson, C A.]]
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[[Category: Nelson, C A]]
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[[Category: Nybakken, G E.]]
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[[Category: Nybakken, G E]]
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[[Category: Rossmann, M G.]]
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[[Category: Rossmann, M G]]
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[[Category: Warren, J T.]]
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[[Category: Warren, J T]]
[[Category: Atp-binding]]
[[Category: Atp-binding]]
[[Category: Capsid protein]]
[[Category: Capsid protein]]

Revision as of 09:55, 25 December 2014

The pseudo-atomic structure of dengue immature virus in complex with Fab fragments of the anti-fusion loop antibody E53

3ixy, resolution 23.00Å

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