3ixy
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3ixy]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IXY FirstGlance]. <br> | <table><tr><td colspan='2'>[[3ixy]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Dengue_virus_2 Dengue virus 2] and [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IXY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IXY FirstGlance]. <br> | ||
- | </td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ixy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ixy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ixy RCSB], [http://www.ebi.ac.uk/pdbsum/3ixy PDBsum]</span></td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ixy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ixy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ixy RCSB], [http://www.ebi.ac.uk/pdbsum/3ixy PDBsum]</span></td></tr> |
- | <table> | + | </table> |
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/POLG_DEN2U POLG_DEN2U]] prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response. Soluble and membrane-associated NS1 may activate human complement and induce host vascular leakage. This effect might explain the clinical manifestations of dengue hemorrhagic fever and dengue shock syndrome (By similarity). | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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[[Category: Dengue virus 2]] | [[Category: Dengue virus 2]] | ||
[[Category: Mus musculus]] | [[Category: Mus musculus]] | ||
- | [[Category: Cherrier, M V | + | [[Category: Cherrier, M V]] |
- | [[Category: Chipman, P R | + | [[Category: Chipman, P R]] |
- | [[Category: Diamond, M S | + | [[Category: Diamond, M S]] |
- | [[Category: Fremont, D H | + | [[Category: Fremont, D H]] |
- | [[Category: Holdaway, H A | + | [[Category: Holdaway, H A]] |
- | [[Category: Kaufmann, B | + | [[Category: Kaufmann, B]] |
- | [[Category: Kostyuchenko, V A | + | [[Category: Kostyuchenko, V A]] |
- | [[Category: Kuhn, R J | + | [[Category: Kuhn, R J]] |
- | [[Category: Lok, S M | + | [[Category: Lok, S M]] |
- | [[Category: Nelson, C A | + | [[Category: Nelson, C A]] |
- | [[Category: Nybakken, G E | + | [[Category: Nybakken, G E]] |
- | [[Category: Rossmann, M G | + | [[Category: Rossmann, M G]] |
- | [[Category: Warren, J T | + | [[Category: Warren, J T]] |
[[Category: Atp-binding]] | [[Category: Atp-binding]] | ||
[[Category: Capsid protein]] | [[Category: Capsid protein]] |
Revision as of 09:55, 25 December 2014
The pseudo-atomic structure of dengue immature virus in complex with Fab fragments of the anti-fusion loop antibody E53
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Categories: Dengue virus 2 | Mus musculus | Cherrier, M V | Chipman, P R | Diamond, M S | Fremont, D H | Holdaway, H A | Kaufmann, B | Kostyuchenko, V A | Kuhn, R J | Lok, S M | Nelson, C A | Nybakken, G E | Rossmann, M G | Warren, J T | Atp-binding | Capsid protein | Cleavage on pair of basic residue | Core protein | Dengue virus | Denv | E53 | Endoplasmic reticulum | Envelope protein | Fab | Fusion loop | Glycoprotein | Helicase | Hydrolase | Immature | Membrane | Nucleotide-binding | Rna replication | Secreted | Transmembrane | Virion | Virus