3btp
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3btp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BTP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BTP FirstGlance]. <br> | <table><tr><td colspan='2'>[[3btp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BTP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BTP FirstGlance]. <br> | ||
| - | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> |
| - | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">virE2, Atu6190, AGR_pTi_28 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58]), virE1, Atu6189, AGR_pTi_26 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">virE2, Atu6190, AGR_pTi_28 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58]), virE1, Atu6189, AGR_pTi_26 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])</td></tr> |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3btp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3btp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3btp RCSB], [http://www.ebi.ac.uk/pdbsum/3btp PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3btp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3btp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3btp RCSB], [http://www.ebi.ac.uk/pdbsum/3btp PDBsum]</span></td></tr> |
| - | <table> | + | </table> |
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/VIRE2_AGRT5 VIRE2_AGRT5]] Involved in DNA transformation; mediates the nuclear uptake of single-stranded DNA copies of the transferred DNA (T-DNA) element. Binds single-stranded but not double-stranded DNA regardless of nucleotide sequence composition.<ref>PMID:17784072</ref> <ref>PMID:8637884</ref> <ref>PMID:12124400</ref> [[http://www.uniprot.org/uniprot/VIRE1_AGRT5 VIRE1_AGRT5]] Involved in DNA transformation; controls virE2 polymerization and prevents virE2 binding to DNA. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Agrobacterium tumefaciens str. c58]] | [[Category: Agrobacterium tumefaciens str. c58]] | ||
| - | [[Category: Albeck, S | + | [[Category: Albeck, S]] |
| - | [[Category: Dym, O | + | [[Category: Dym, O]] |
| - | [[Category: Elbaum, M | + | [[Category: Elbaum, M]] |
| - | [[Category: ISPC, Israel Structural Proteomics Center | + | [[Category: ISPC, Israel Structural Proteomics Center]] |
| - | [[Category: Unger, T | + | [[Category: Unger, T]] |
[[Category: Chaperone]] | [[Category: Chaperone]] | ||
[[Category: Crown gall tumor]] | [[Category: Crown gall tumor]] | ||
[[Category: Dna binding protein]] | [[Category: Dna binding protein]] | ||
[[Category: Dna-binding]] | [[Category: Dna-binding]] | ||
| - | [[Category: ISPC]] | ||
| - | [[Category: Israel Structural Proteomics Center]] | ||
[[Category: Novel fold]] | [[Category: Novel fold]] | ||
[[Category: Secreted]] | [[Category: Secreted]] | ||
Revision as of 12:08, 25 December 2014
Crystal structure of Agrobacterium tumefaciens VirE2 in complex with its chaperone VirE1: a novel fold and implications for DNA binding
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