4das

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_4das| PDB=4das | SCENE= }}
+
==Crystal structure of Bullfrog M ferritin==
-
===Crystal structure of Bullfrog M ferritin===
+
<StructureSection load='4das' size='340' side='right' caption='[[4das]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_22424302}}
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[4das]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Rana_catesbeiana Rana catesbeiana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DAS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DAS FirstGlance]. <br>
-
==Function==
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3rgd|3rgd]], [[3rbc|3rbc]], [[3re7|3re7]]</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4das FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4das OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4das RCSB], [http://www.ebi.ac.uk/pdbsum/4das PDBsum]</span></td></tr>
 +
</table>
 +
== Function ==
[[http://www.uniprot.org/uniprot/FRI2_LITCT FRI2_LITCT]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
[[http://www.uniprot.org/uniprot/FRI2_LITCT FRI2_LITCT]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The first step of iron biomineralization mediated by ferritin is the oxidation at the ferroxidase active site of two ferrous ions to a diferric oxo/hydroxo species. Metal-loaded ferritin crystals obtained by soaking crystals of frog ferritin in FeSO(4) and CuSO(4) solutions followed by flash freezing provided X-ray crystal structures of the tripositive iron and bipositive copper adducts at 2.7 and 2.8 A resolution, respectively. At variance with the already available structures, the crystal form used in this study contains 24 independent subunits in the asymmetric unit permitting comparison between them. For the first time, the diferric species at the ferroxidase site is identified in ferritins from higher eukaryotes. Anomalous difference Fourier maps for crystals (iron crystal 1) obtained after long soaking times in FeSO(4) solution invariantly showed diferric species with a Fe-Fe average distance of 3.1 +/- 0.1 A, strongly indicative of the presence of a mu-oxo/hydroxo bridge between the irons; protein ligands for each iron ion (Fe1 and Fe2) were also unequivocally identified and found to be the same in all subunits. For copper bound ferritin, dicopper(II) centers are also observed. While copper at site 1 is essentially in the same position and has the same coordination environment as Fe1, copper at site 2 is displaced toward His54, now acting as a ligand; this results in an increased intermetal distance (4.3 +/- 0.4 A). His54 coordination and longer metal-metal distances might represent peculiar features of divalent cations at the ferroxidase site. This oxidation-dependent structural information may provide key features for the mechanistic pathway in ferritins from higher eukaryotes that drive uptake of bivalent cation and release of ferric products at the catalytic site. This mechanism is supported by the X-ray picture obtained after only 1 min of soaking in FeSO(4) solutions (iron crystal 2) which reasonably contain the metal at different oxidation states. Here two different di-iron species are trapped in the active site, with intermetal distances corresponding to those of the ferric dimer in crystal 1 and of the dicopper centers and corresponding rearrangement of the His54 side chain.
-
==About this Structure==
+
Structural insights into the ferroxidase site of ferritins from higher eukaryotes.,Bertini I, Lalli D, Mangani S, Pozzi C, Rosa C, Theil EC, Turano P J Am Chem Soc. 2012 Apr 11;134(14):6169-76. doi: 10.1021/ja210084n. Epub 2012 Mar, 28. PMID:22424302<ref>PMID:22424302</ref>
-
[[4das]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Rana_catesbeiana Rana catesbeiana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DAS OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:022424302</ref><references group="xtra"/><references/>
+
</div>
 +
 
 +
==See Also==
 +
*[[Ferritin|Ferritin]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Ferroxidase]]
[[Category: Ferroxidase]]
[[Category: Rana catesbeiana]]
[[Category: Rana catesbeiana]]
-
[[Category: Bertini, I.]]
+
[[Category: Bertini, I]]
-
[[Category: Lalli, D.]]
+
[[Category: Lalli, D]]
-
[[Category: Mangani, S.]]
+
[[Category: Mangani, S]]
-
[[Category: Pozzi, C.]]
+
[[Category: Pozzi, C]]
-
[[Category: Rosa, C.]]
+
[[Category: Rosa, C]]
-
[[Category: Turano, P.]]
+
[[Category: Turano, P]]
[[Category: 24-subunit maxiferritin]]
[[Category: 24-subunit maxiferritin]]
-
[[Category: Ferroxidase]]
 
[[Category: Four-helix bundle subunit]]
[[Category: Four-helix bundle subunit]]
[[Category: Iron storage protein]]
[[Category: Iron storage protein]]
[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]

Revision as of 13:52, 25 December 2014

Crystal structure of Bullfrog M ferritin

4das, resolution 2.56Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools