4tnh
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4tnh]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TNH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TNH FirstGlance]. <br> | <table><tr><td colspan='2'>[[4tnh]] is a 40 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermosynechococcus_elongatus Thermosynechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TNH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TNH FirstGlance]. <br> | ||
- | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene></td></tr> |
- | <tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> |
- | <tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4tni|4tni]], [[4tnj|4tnj]], [[4tnk|4tnk]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4tni|4tni]], [[4tnj|4tnj]], [[4tnk|4tnk]]</td></tr> |
- | <tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr> | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_II Photosystem II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.9 1.10.3.9] </span></td></tr> |
- | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tnh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tnh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4tnh RCSB], [http://www.ebi.ac.uk/pdbsum/4tnh PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tnh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tnh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4tnh RCSB], [http://www.ebi.ac.uk/pdbsum/4tnh PDBsum]</span></td></tr> |
- | <table> | + | </table> |
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/PSBF_THEEB PSBF_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex (By similarity).[HAMAP-Rule:MF_00643] [[http://www.uniprot.org/uniprot/PSBL_THEEB PSBL_THEEB]] Required for PSII activity (By similarity). [[http://www.uniprot.org/uniprot/PSBJ_THEEB PSBJ_THEEB]] This protein is a component of the reaction center of photosystem II (By similarity). [[http://www.uniprot.org/uniprot/YCF12_THEEB YCF12_THEEB]] A core subunit of photosystem II (PSII).[HAMAP-Rule:MF_01329] [[http://www.uniprot.org/uniprot/PSBZ_THEEB PSBZ_THEEB]] Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. May also aid in binding of PsbK, Ycf12 and the oxygen-evolving complex to PSII, at least in vitro.<ref>PMID:17967798</ref> [[http://www.uniprot.org/uniprot/PSBU_THEEB PSBU_THEEB]] Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation (By similarity).[HAMAP-Rule:MF_00589] [[http://www.uniprot.org/uniprot/PSBT_THEEB PSBT_THEEB]] Seems to play a role in the dimerization of PSII.<ref>PMID:15653799</ref> [[http://www.uniprot.org/uniprot/PSBI_THEEB PSBI_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_01316] [[http://www.uniprot.org/uniprot/PSBA1_THEEB PSBA1_THEEB]] This is one of the two reaction center proteins of photosystem II. [[http://www.uniprot.org/uniprot/PSBX_THEEB PSBX_THEEB]] Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.<ref>PMID:11230572</ref> [[http://www.uniprot.org/uniprot/PSBK_THEEB PSBK_THEEB]] This protein is a component of the reaction center of photosystem II.[HAMAP-Rule:MF_00441] [[http://www.uniprot.org/uniprot/PSBO_THEEB PSBO_THEEB]] MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII (By similarity). [[http://www.uniprot.org/uniprot/CY550_THEEB CY550_THEEB]] Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II. It is not essential for growth under normal conditions but is required under low CO(2) concentrations.[HAMAP-Rule:MF_01378] [[http://www.uniprot.org/uniprot/PSBE_THEEB PSBE_THEEB]] This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex.[HAMAP-Rule:MF_00642] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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[[Category: Photosystem II]] | [[Category: Photosystem II]] | ||
[[Category: Thermosynechococcus elongatus]] | [[Category: Thermosynechococcus elongatus]] | ||
- | [[Category: Adams, P D | + | [[Category: Adams, P D]] |
- | [[Category: Alonso-Mori, R | + | [[Category: Alonso-Mori, R]] |
- | [[Category: Bergmann, U | + | [[Category: Bergmann, U]] |
- | [[Category: Bogan, M J | + | [[Category: Bogan, M J]] |
- | [[Category: Boutet, S | + | [[Category: Boutet, S]] |
- | [[Category: Brewster, A | + | [[Category: Brewster, A]] |
- | [[Category: Chatterjee, R | + | [[Category: Chatterjee, R]] |
- | [[Category: DiFiore, D | + | [[Category: DiFiore, D]] |
- | [[Category: Echols, N | + | [[Category: Echols, N]] |
- | [[Category: Fry, A R | + | [[Category: Fry, A R]] |
- | [[Category: Gallo, E | + | [[Category: Gallo, E]] |
- | [[Category: Gildea, R J | + | [[Category: Gildea, R J]] |
- | [[Category: Glatzel, P | + | [[Category: Glatzel, P]] |
- | [[Category: Gloeckner, C | + | [[Category: Gloeckner, C]] |
- | [[Category: Gul, S | + | [[Category: Gul, S]] |
- | [[Category: Han, G | + | [[Category: Han, G]] |
- | [[Category: Hattne, J | + | [[Category: Hattne, J]] |
- | [[Category: Hellmich, J | + | [[Category: Hellmich, J]] |
- | [[Category: Ibrahim, M | + | [[Category: Ibrahim, M]] |
- | [[Category: Kern, J | + | [[Category: Kern, J]] |
- | [[Category: Koglin, J E | + | [[Category: Koglin, J E]] |
- | [[Category: Koroidov, S | + | [[Category: Koroidov, S]] |
- | [[Category: Laksmono, H | + | [[Category: Laksmono, H]] |
- | [[Category: Lampe, A | + | [[Category: Lampe, A]] |
- | [[Category: Lassalle-Kaiser, B | + | [[Category: Lassalle-Kaiser, B]] |
- | [[Category: Messerschmidt, M | + | [[Category: Messerschmidt, M]] |
- | [[Category: Messinger, J | + | [[Category: Messinger, J]] |
- | [[Category: Milathianaki, D | + | [[Category: Milathianaki, D]] |
- | [[Category: Sauter, N K | + | [[Category: Sauter, N K]] |
- | [[Category: Seibert, M M | + | [[Category: Seibert, M M]] |
- | [[Category: Sierra, R G | + | [[Category: Sierra, R G]] |
- | [[Category: Skinner, D E | + | [[Category: Skinner, D E]] |
- | [[Category: Sokaras, D | + | [[Category: Sokaras, D]] |
- | [[Category: Stan, C A | + | [[Category: Stan, C A]] |
- | [[Category: Tran, R | + | [[Category: Tran, R]] |
- | [[Category: Uhlig, J | + | [[Category: Uhlig, J]] |
- | [[Category: Weng, T C | + | [[Category: Weng, T C]] |
- | [[Category: Williams, G J | + | [[Category: Williams, G J]] |
- | [[Category: Yachandra, V K | + | [[Category: Yachandra, V K]] |
- | [[Category: Yano, J | + | [[Category: Yano, J]] |
- | [[Category: Zouni, A | + | [[Category: Zouni, A]] |
- | [[Category: Zwart, P H | + | [[Category: Zwart, P H]] |
[[Category: Electron transport]] | [[Category: Electron transport]] | ||
[[Category: Membrane protein]] | [[Category: Membrane protein]] |
Revision as of 18:10, 25 December 2014
RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution
|
Categories: Photosystem II | Thermosynechococcus elongatus | Adams, P D | Alonso-Mori, R | Bergmann, U | Bogan, M J | Boutet, S | Brewster, A | Chatterjee, R | DiFiore, D | Echols, N | Fry, A R | Gallo, E | Gildea, R J | Glatzel, P | Gloeckner, C | Gul, S | Han, G | Hattne, J | Hellmich, J | Ibrahim, M | Kern, J | Koglin, J E | Koroidov, S | Laksmono, H | Lampe, A | Lassalle-Kaiser, B | Messerschmidt, M | Messinger, J | Milathianaki, D | Sauter, N K | Seibert, M M | Sierra, R G | Skinner, D E | Sokaras, D | Stan, C A | Tran, R | Uhlig, J | Weng, T C | Williams, G J | Yachandra, V K | Yano, J | Zouni, A | Zwart, P H | Electron transport | Membrane protein | Photosynthesis | Water oxidation | X-ray free electron laser