2p82
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2p82]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P82 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P82 FirstGlance]. <br> | <table><tr><td colspan='2'>[[2p82]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P82 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P82 FirstGlance]. <br> | ||
- | </td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>< | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
- | <tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ATG4A, APG4A, AUTL2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr> | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ATG4A, APG4A, AUTL2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr> |
- | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p82 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p82 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p82 RCSB], [http://www.ebi.ac.uk/pdbsum/2p82 PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p82 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p82 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p82 RCSB], [http://www.ebi.ac.uk/pdbsum/2p82 PDBsum]</span></td></tr> |
- | <table> | + | </table> |
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/ATG4A_HUMAN ATG4A_HUMAN]] Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.<ref>PMID:15169837</ref> <ref>PMID:12473658</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
- | [[Category: Arrowsmith, C H | + | [[Category: Arrowsmith, C H]] |
- | [[Category: Bochkarev, A | + | [[Category: Bochkarev, A]] |
- | [[Category: Butler-Cole, C | + | [[Category: Butler-Cole, C]] |
- | [[Category: Davis, T | + | [[Category: Davis, T]] |
- | [[Category: Dhe-Paganon, S | + | [[Category: Dhe-Paganon, S]] |
- | [[Category: Edwards, A M | + | [[Category: Edwards, A M]] |
- | [[Category: Finerty, P J | + | [[Category: Finerty, P J]] |
- | [[Category: Mujib, S | + | [[Category: Mujib, S]] |
- | [[Category: | + | [[Category: Structural genomic]] |
- | [[Category: Sundstrom, M | + | [[Category: Sundstrom, M]] |
- | [[Category: Walker, J R | + | [[Category: Walker, J R]] |
- | [[Category: Weigelt, J | + | [[Category: Weigelt, J]] |
[[Category: Autophagy]] | [[Category: Autophagy]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
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[[Category: Protein transport]] | [[Category: Protein transport]] | ||
[[Category: Sgc]] | [[Category: Sgc]] | ||
- | [[Category: Structural genomic]] | ||
- | [[Category: Structural genomics consortium]] | ||
[[Category: Thiol protease]] | [[Category: Thiol protease]] | ||
[[Category: Transport]] | [[Category: Transport]] | ||
[[Category: Ubl conjugation pathway]] | [[Category: Ubl conjugation pathway]] |
Revision as of 19:59, 25 December 2014
Cysteine protease ATG4A
|
Categories: Homo sapiens | Arrowsmith, C H | Bochkarev, A | Butler-Cole, C | Davis, T | Dhe-Paganon, S | Edwards, A M | Finerty, P J | Mujib, S | Structural genomic | Sundstrom, M | Walker, J R | Weigelt, J | Autophagy | Hydrolase | Protease | Protein transport | Sgc | Thiol protease | Transport | Ubl conjugation pathway