Exosome
From Proteopedia
(Difference between revisions)
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<StructureSection load='2je6' size='340' side='right' caption='Exosome complex containing exonuclease 1 (green), exonuclease 2 (grey) and exosome complex RNA-binding protein 1 (wheat) complex with PEG400 (pdb code [[2je6]]).' scene=''> | <StructureSection load='2je6' size='340' side='right' caption='Exosome complex containing exonuclease 1 (green), exonuclease 2 (grey) and exosome complex RNA-binding protein 1 (wheat) complex with PEG400 (pdb code [[2je6]]).' scene=''> | ||
The Exosome complex (or just- Exosome) is a multi-protein complex capable of degrading various types of RNA molecules. The Exosome complex is found in eukaryotic cell, and also in archaea, while in bacteria it is found as a simpler complex (but it has the same function). <ref>http://en.wikipedia.org/wiki/Exosome_complex#Structure</ref> | The Exosome complex (or just- Exosome) is a multi-protein complex capable of degrading various types of RNA molecules. The Exosome complex is found in eukaryotic cell, and also in archaea, while in bacteria it is found as a simpler complex (but it has the same function). <ref>http://en.wikipedia.org/wiki/Exosome_complex#Structure</ref> | ||
+ | __TOC__ | ||
== Function == | == Function == | ||
In order to see the structure of the protein complex, press <scene name='60/609824/2nn6/8'>Exosome</scene>. | In order to see the structure of the protein complex, press <scene name='60/609824/2nn6/8'>Exosome</scene>. | ||
- | + | ===Enzymatic function=== | |
The exosome is primarily a 3'-5' exoribonuclease, meaning that it degrades RNA molecules from their 3' end. In eukaryotes it also have an endoribonucleolytic function, meaning it cleaves RNA at sites within the molecule. | The exosome is primarily a 3'-5' exoribonuclease, meaning that it degrades RNA molecules from their 3' end. In eukaryotes it also have an endoribonucleolytic function, meaning it cleaves RNA at sites within the molecule. | ||
- | + | ===Substrates=== | |
The exosome is involved in the degradation and processing of a wide variety of RNA species. Substrates of the exosome include messenger RNA, ribosomal RNA, and many species of small RNAs. | The exosome is involved in the degradation and processing of a wide variety of RNA species. Substrates of the exosome include messenger RNA, ribosomal RNA, and many species of small RNAs. | ||
== Disease == | == Disease == | ||
- | + | ===Autoimmunity=== | |
The exosome complex is the target of autoantibodies, which are known to be found in people that suffer from various autoimmune diseases (especially PM/Scl overlap syndrome). In the autoimune diseases, antibodies are mainly directed against two of the proteins of the complex, called PM/Scl-100 and PM/Scl-75. | The exosome complex is the target of autoantibodies, which are known to be found in people that suffer from various autoimmune diseases (especially PM/Scl overlap syndrome). In the autoimune diseases, antibodies are mainly directed against two of the proteins of the complex, called PM/Scl-100 and PM/Scl-75. | ||
- | + | ===Cancer treatment=== | |
The Exosome is found to be inhibited by a cancer chemotherapy drug, which called antimetabolite fluorouracil. This drug is one of the most successful drugs for treating solid tumors. | The Exosome is found to be inhibited by a cancer chemotherapy drug, which called antimetabolite fluorouracil. This drug is one of the most successful drugs for treating solid tumors. | ||
- | + | ===Neurological disorders=== | |
Mutations in Exosome component 3 cause pontocerebellar hypoplasia and spinal motor neuron disease. | Mutations in Exosome component 3 cause pontocerebellar hypoplasia and spinal motor neuron disease. | ||
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</StructureSection> | </StructureSection> | ||
+ | ==3D structures of exosome== | ||
+ | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
+ | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
+ | |||
+ | *Exosome | ||
+ | |||
+ | **[[2je6]], [[2br2]] – SsRRP4 + RRP41 + RRP42 – Sulfolobus solfataricus <br /> | ||
+ | **[[2jeb]] - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + Mn<br /> | ||
+ | **[[2ba0]] – AfRRP4 + RRP41 + RRP42 – Archaeoglobus fulgidus<br /> | ||
+ | **[[2ba1]] – AfCSL4 + RRP41 + RRP42 <br /> | ||
+ | **[[2nn6]] – hCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 - human<br /> | ||
+ | **[[2hbj]], [[2hbk]] – yRRP6 (mutant) <br /> | ||
+ | **[[2hbl]], [[2hbm]] – yRRP6 (mutant) + nucleotide<br /> | ||
+ | **[[4wfc]] – yRRP6 +RRP47 <br /> | ||
+ | **[[4wfd]] – yRRP6 +RRP47 + MTR4<br /> | ||
+ | **[[2cpr]] – hRRP6 HRDC domain – NMR<br /> | ||
+ | **[[3saf]], [[3sag]], [[3sah]] – hRRP6 catalytic domain (mutant)<br /> | ||
+ | |||
+ | *Exosome complex with RNA | ||
+ | |||
+ | **[[2jea]] - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + RNA<br /> | ||
+ | **[[3m7n]] – AfCSL4 + RRP41 + RRP42 + RNA<br /> | ||
+ | **[[2m85]] – AfCSL4 + RRP41 (mutant) + RRP42 (mutant) + RNA<br /> | ||
+ | **[[4ifd]] – yCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 + RNA - yeast<br /> | ||
+ | **[[4oo1]] – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + RNA <br /> | ||
+ | |||
+ | |||
== References == | == References == | ||
<references/> | <references/> | ||
+ | [[Category: Topic Page]] |
Revision as of 08:59, 28 December 2014
Exosome
|
3D structures of exosome
Updated on 28-December-2014 {{#tree:id=OrganizedByTopic|openlevels=0|
- Exosome
- 2je6, 2br2 – SsRRP4 + RRP41 + RRP42 – Sulfolobus solfataricus
- 2jeb - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + Mn
- 2ba0 – AfRRP4 + RRP41 + RRP42 – Archaeoglobus fulgidus
- 2ba1 – AfCSL4 + RRP41 + RRP42
- 2nn6 – hCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 - human
- 2hbj, 2hbk – yRRP6 (mutant)
- 2hbl, 2hbm – yRRP6 (mutant) + nucleotide
- 4wfc – yRRP6 +RRP47
- 4wfd – yRRP6 +RRP47 + MTR4
- 2cpr – hRRP6 HRDC domain – NMR
- 3saf, 3sag, 3sah – hRRP6 catalytic domain (mutant)
- 2je6, 2br2 – SsRRP4 + RRP41 + RRP42 – Sulfolobus solfataricus
- Exosome complex with RNA
- 2jea - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + RNA
- 3m7n – AfCSL4 + RRP41 + RRP42 + RNA
- 2m85 – AfCSL4 + RRP41 (mutant) + RRP42 (mutant) + RNA
- 4ifd – yCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 + RNA - yeast
- 4oo1 – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + RNA
- 2jea - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + RNA