Exosome

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<StructureSection load='2je6' size='340' side='right' caption='Exosome complex containing exonuclease 1 (green), exonuclease 2 (grey) and exosome complex RNA-binding protein 1 (wheat) complex with PEG400 (pdb code [[2je6]]).' scene=''>
<StructureSection load='2je6' size='340' side='right' caption='Exosome complex containing exonuclease 1 (green), exonuclease 2 (grey) and exosome complex RNA-binding protein 1 (wheat) complex with PEG400 (pdb code [[2je6]]).' scene=''>
The Exosome complex (or just- Exosome) is a multi-protein complex capable of degrading various types of RNA molecules. The Exosome complex is found in eukaryotic cell, and also in archaea, while in bacteria it is found as a simpler complex (but it has the same function). <ref>http://en.wikipedia.org/wiki/Exosome_complex#Structure</ref>
The Exosome complex (or just- Exosome) is a multi-protein complex capable of degrading various types of RNA molecules. The Exosome complex is found in eukaryotic cell, and also in archaea, while in bacteria it is found as a simpler complex (but it has the same function). <ref>http://en.wikipedia.org/wiki/Exosome_complex#Structure</ref>
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__TOC__
== Function ==
== Function ==
In order to see the structure of the protein complex, press <scene name='60/609824/2nn6/8'>Exosome</scene>.
In order to see the structure of the protein complex, press <scene name='60/609824/2nn6/8'>Exosome</scene>.
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'''Enzymatic function'''
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===Enzymatic function===
The exosome is primarily a 3'-5' exoribonuclease, meaning that it degrades RNA molecules from their 3' end. In eukaryotes it also have an endoribonucleolytic function, meaning it cleaves RNA at sites within the molecule.
The exosome is primarily a 3'-5' exoribonuclease, meaning that it degrades RNA molecules from their 3' end. In eukaryotes it also have an endoribonucleolytic function, meaning it cleaves RNA at sites within the molecule.
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'''Substrates'''
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===Substrates===
The exosome is involved in the degradation and processing of a wide variety of RNA species. Substrates of the exosome include messenger RNA, ribosomal RNA, and many species of small RNAs.
The exosome is involved in the degradation and processing of a wide variety of RNA species. Substrates of the exosome include messenger RNA, ribosomal RNA, and many species of small RNAs.
== Disease ==
== Disease ==
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'''Autoimmunity'''
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===Autoimmunity===
The exosome complex is the target of autoantibodies, which are known to be found in people that suffer from various autoimmune diseases (especially PM/Scl overlap syndrome). In the autoimune diseases, antibodies are mainly directed against two of the proteins of the complex, called PM/Scl-100 and PM/Scl-75.
The exosome complex is the target of autoantibodies, which are known to be found in people that suffer from various autoimmune diseases (especially PM/Scl overlap syndrome). In the autoimune diseases, antibodies are mainly directed against two of the proteins of the complex, called PM/Scl-100 and PM/Scl-75.
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'''Cancer treatment'''
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===Cancer treatment===
The Exosome is found to be inhibited by a cancer chemotherapy drug, which called antimetabolite fluorouracil. This drug is one of the most successful drugs for treating solid tumors.
The Exosome is found to be inhibited by a cancer chemotherapy drug, which called antimetabolite fluorouracil. This drug is one of the most successful drugs for treating solid tumors.
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'''Neurological disorders'''
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===Neurological disorders===
Mutations in Exosome component 3 cause pontocerebellar hypoplasia and spinal motor neuron disease.
Mutations in Exosome component 3 cause pontocerebellar hypoplasia and spinal motor neuron disease.
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</StructureSection>
</StructureSection>
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==3D structures of exosome==
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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*Exosome
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**[[2je6]], [[2br2]] – SsRRP4 + RRP41 + RRP42 – Sulfolobus solfataricus <br />
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**[[2jeb]] - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + Mn<br />
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**[[2ba0]] – AfRRP4 + RRP41 + RRP42 – Archaeoglobus fulgidus<br />
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**[[2ba1]] – AfCSL4 + RRP41 + RRP42 <br />
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**[[2nn6]] – hCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 - human<br />
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**[[2hbj]], [[2hbk]] – yRRP6 (mutant) <br />
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**[[2hbl]], [[2hbm]] – yRRP6 (mutant) + nucleotide<br />
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**[[4wfc]] – yRRP6 +RRP47 <br />
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**[[4wfd]] – yRRP6 +RRP47 + MTR4<br />
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**[[2cpr]] – hRRP6 HRDC domain – NMR<br />
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**[[3saf]], [[3sag]], [[3sah]] – hRRP6 catalytic domain (mutant)<br />
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*Exosome complex with RNA
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**[[2jea]] - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + RNA<br />
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**[[3m7n]] – AfCSL4 + RRP41 + RRP42 + RNA<br />
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**[[2m85]] – AfCSL4 + RRP41 (mutant) + RRP42 (mutant) + RNA<br />
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**[[4ifd]] – yCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 + RNA - yeast<br />
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**[[4oo1]] – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + RNA <br />
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== References ==
== References ==
<references/>
<references/>
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[[Category: Topic Page]]

Revision as of 08:59, 28 December 2014

Exosome

Exosome complex containing exonuclease 1 (green), exonuclease 2 (grey) and exosome complex RNA-binding protein 1 (wheat) complex with PEG400 (pdb code 2je6).

Drag the structure with the mouse to rotate

3D structures of exosome

Updated on 28-December-2014 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Exosome
    • 2je6, 2br2 – SsRRP4 + RRP41 + RRP42 – Sulfolobus solfataricus
    • 2jeb - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + Mn
    • 2ba0 – AfRRP4 + RRP41 + RRP42 – Archaeoglobus fulgidus
    • 2ba1 – AfCSL4 + RRP41 + RRP42
    • 2nn6 – hCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 - human
    • 2hbj, 2hbk – yRRP6 (mutant)
    • 2hbl, 2hbm – yRRP6 (mutant) + nucleotide
    • 4wfc – yRRP6 +RRP47
    • 4wfd – yRRP6 +RRP47 + MTR4
    • 2cpr – hRRP6 HRDC domain – NMR
    • 3saf, 3sag, 3sah – hRRP6 catalytic domain (mutant)
  • Exosome complex with RNA
    • 2jea - SsRRP4 + RRP41 + RRP42 + exonuclease 1 + RNA-binding protein 1 + RNA
    • 3m7n – AfCSL4 + RRP41 + RRP42 + RNA
    • 2m85 – AfCSL4 + RRP41 (mutant) + RRP42 (mutant) + RNA
    • 4ifd – yCSL4 + RRP40 + RRP41 + RRP42 + RRP43 + RRP44 + RRP45 + RRP46 + RRP4 + MTR3 + RNA - yeast
    • 4oo1 – yCSL4 + RRP40 + RRP42 + RRP43 + RRP45 + RRP46 + RRP4 + RRP6 + SKI6 + MTR3 + RNA


References

  1. http://en.wikipedia.org/wiki/Exosome_complex#Structure

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