Sandbox Reserved 952

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In [[http://www.uniprot.org/uniprot/CKX1_MAIZE CKX]], the substrate displays a “plug­-into­-socket” binding mode that seals the catalytic site [3]. It interacts with the enzyme with polarising H­bond that stabilizes the tridimensional structure. The Asp169 is H­bonded to the N10 atom of the substrate (various studies have shown that it is involved in the recognition of the substrate) and to the Glu288. The substrate is recognized also by Glu381 which H­bonded to the N7 atom. The others N­atoms are H­bonded with the solvent except for N1 atom. The FAD is H­bonded with the His105.
In [[http://www.uniprot.org/uniprot/CKX1_MAIZE CKX]], the substrate displays a “plug­-into­-socket” binding mode that seals the catalytic site [3]. It interacts with the enzyme with polarising H­bond that stabilizes the tridimensional structure. The Asp169 is H­bonded to the N10 atom of the substrate (various studies have shown that it is involved in the recognition of the substrate) and to the Glu288. The substrate is recognized also by Glu381 which H­bonded to the N7 atom. The others N­atoms are H­bonded with the solvent except for N1 atom. The FAD is H­bonded with the His105.
These interactions allow the positioning the C11 atom in close contact (3.0 A°) with the flavin N5 atom [3]. This carbon will be the site of oxidative attack [3]. This information suggests there is a direct transfer of the electrons and the proton to the flavin with a short­lived radical intermediate or the direct transfer of a hydride anion [3]. The carbocation is stabilized by the N10–Asp 169 H-bond interaction and the resonance effect in the oxidised imine product.
These interactions allow the positioning the C11 atom in close contact (3.0 A°) with the flavin N5 atom [3]. This carbon will be the site of oxidative attack [3]. This information suggests there is a direct transfer of the electrons and the proton to the flavin with a short­lived radical intermediate or the direct transfer of a hydride anion [3]. The carbocation is stabilized by the N10–Asp 169 H-bond interaction and the resonance effect in the oxidised imine product.
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The reduced enzyme­product complex is reoxidised by utilizing an organic electron acceptor, the hydroxamic acid 2,4­dihydroxy­7­methoxy­1,4­benzoxazin­3­on (DIMBOA) or more precisely, the free radicals generated by [[http://www.uniprot.org/uniprot/Q4VJ26_MAIZE LACCASE]] and [[http://www.uniprot.org/uniprot/PER1_MAIZE PEROXIDASE]] with the DIMBOA. The reoxidation of FADH2 allows the product release.
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The reduced enzyme­product complex is reoxidised by utilizing an organic electron acceptor, the hydroxamic acid 2,4­ dihydroxy­ 7 ­methoxy­ 1,4­benzoxazin­3­on ([http://en.wikipedia.org/wiki/DIMBOA DIMBOA]) or more precisely, the free radicals generated by [[http://www.uniprot.org/uniprot/Q4VJ26_MAIZE LACCASE]] and [[http://www.uniprot.org/uniprot/PER1_MAIZE PEROXIDASE]] with the [http://en.wikipedia.org/wiki/DIMBOA DIMBOA]. The reoxidation of FADH2 allows the product release.
== Regulation ==
== Regulation ==

Revision as of 09:21, 31 December 2014

This Sandbox is Reserved from 15/11/2014, through 15/05/2015 for use in the course "Biomolecule" taught by Bruno Kieffer at the Strasbourg University. This reservation includes Sandbox Reserved 951 through Sandbox Reserved 975.
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Crystal structure of Maize cytokinin oxidase/dehydrogenase complexed with phenylurea inhibitor CPPU

2qkn, resolution 2.15Å

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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