Sandbox Reserved 952
From Proteopedia
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== Mechanism == | == Mechanism == | ||
- | In | + | In [http://www.uniprot.org/uniprot/CKX1_MAIZE CKX], the substrate displays a “plug-into-socket” binding mode that seals the catalytic site [3]. It interacts with the enzyme with polarising Hbond that stabilizes the tridimensional structure. The Asp169 is Hbonded to the N10 atom of the substrate (various studies have shown that it is involved in the recognition of the substrate) and to the Glu288. The substrate is recognized also by Glu381 which Hbonded to the N7 atom. The others Natoms are Hbonded with the solvent except for N1 atom. The FAD is Hbonded with the His105. |
These interactions allow the positioning the C11 atom in close contact (3.0 A°) with the flavin N5 atom [3]. This carbon will be the site of oxidative attack [3]. This information suggests there is a direct transfer of the electrons and the proton to the flavin with a shortlived radical intermediate or the direct transfer of a hydride anion [3]. The carbocation is stabilized by the N10–Asp 169 H-bond interaction and the resonance effect in the oxidised imine product. | These interactions allow the positioning the C11 atom in close contact (3.0 A°) with the flavin N5 atom [3]. This carbon will be the site of oxidative attack [3]. This information suggests there is a direct transfer of the electrons and the proton to the flavin with a shortlived radical intermediate or the direct transfer of a hydride anion [3]. The carbocation is stabilized by the N10–Asp 169 H-bond interaction and the resonance effect in the oxidised imine product. | ||
- | The reduced enzymeproduct complex is reoxidised by utilizing an organic electron acceptor, the hydroxamic acid 2,4 dihydroxy 7 methoxy 1,4benzoxazin3on ([http://en.wikipedia.org/wiki/DIMBOA DIMBOA]) or more precisely, the free radicals generated by | + | The reduced enzymeproduct complex is reoxidised by utilizing an organic electron acceptor, the hydroxamic acid 2,4 dihydroxy 7 methoxy 1,4benzoxazin3on ([http://en.wikipedia.org/wiki/DIMBOA DIMBOA]) or more precisely, the free radicals generated by [http://www.uniprot.org/uniprot/Q4VJ26_MAIZE LACCASE] and [http://www.uniprot.org/uniprot/PER1_MAIZE PEROXIDASE] with the [http://en.wikipedia.org/wiki/DIMBOA DIMBOA]. The reoxidation of FADH2 allows the product release. |
== Regulation == | == Regulation == | ||
- | The reductive half reaction is fast, therefore, the reoxidation of FAD seems to be the rate limiting step in the catalytic cycle [8]. In absence of organic electron acceptor, oxygen can be used but it is a poor electron acceptor, so the regeneration of free radicals it is an important step. The coupling of | + | The reductive half reaction is fast, therefore, the reoxidation of FAD seems to be the rate limiting step in the catalytic cycle [8]. In absence of organic electron acceptor, oxygen can be used but it is a poor electron acceptor, so the regeneration of free radicals it is an important step. The coupling of [http://www.uniprot.org/uniprot/CKX1_MAIZE CKX] to [http://www.uniprot.org/uniprot/Q4VJ26_MAIZE LACCASE] or [http://www.uniprot.org/uniprot/PER1_MAIZE PEROXIDASE] involves the regulation of these enzyme implies the regulates of the [[http://www.uniprot.org/uniprot/CKX1_MAIZE CKX]] activity. |
Different invivo competitive inhibitors of the [[http://www.uniprot.org/uniprot/CKX1_MAIZE CKX]] have been identified such as diphenylureas, which are known as cytokinin agonists [8] or Ureatype cytokinins [1]. | Different invivo competitive inhibitors of the [[http://www.uniprot.org/uniprot/CKX1_MAIZE CKX]] have been identified such as diphenylureas, which are known as cytokinin agonists [8] or Ureatype cytokinins [1]. | ||
Revision as of 09:22, 31 December 2014
This Sandbox is Reserved from 15/11/2014, through 15/05/2015 for use in the course "Biomolecule" taught by Bruno Kieffer at the Strasbourg University. This reservation includes Sandbox Reserved 951 through Sandbox Reserved 975. |
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Crystal structure of Maize cytokinin oxidase/dehydrogenase complexed with phenylurea inhibitor CPPU
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644