2gso
From Proteopedia
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| - | [[Image:2gso.gif|left|200px]] | + | [[Image:2gso.gif|left|200px]] |
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| - | '''Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with Vanadate''' | + | {{Structure |
| + | |PDB= 2gso |SIZE=350|CAPTION= <scene name='initialview01'>2gso</scene>, resolution 1.30Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> and <scene name='pdbligand=VO4:VANADATE ION'>VO4</scene> | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/Nucleotide_diphosphatase Nucleotide diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.9 3.6.1.9] | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with Vanadate''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2GSO is a [ | + | 2GSO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Xanthomonas_axonopodis_pv._citri_str._306 Xanthomonas axonopodis pv. citri str. 306]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GSO OCA]. |
==Reference== | ==Reference== | ||
| - | Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution., Zalatan JG, Fenn TD, Brunger AT, Herschlag D, Biochemistry. 2006 Aug 15;45(32):9788-803. PMID:[http:// | + | Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution., Zalatan JG, Fenn TD, Brunger AT, Herschlag D, Biochemistry. 2006 Aug 15;45(32):9788-803. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16893180 16893180] |
[[Category: Nucleotide diphosphatase]] | [[Category: Nucleotide diphosphatase]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: npp]] | [[Category: npp]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:08:34 2008'' |
Revision as of 15:08, 20 March 2008
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| , resolution 1.30Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | and | ||||||
| Activity: | Nucleotide diphosphatase, with EC number 3.6.1.9 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with Vanadate
Overview
The rapid expansion of the amount of genomic and structural data has provided many examples of enzymes with evolutionarily related active sites that catalyze different reactions. Functional comparisons of these active sites can provide insight into the origins of the enormous catalytic proficiency of enzymes and the evolutionary changes that can lead to different enzyme activities. The alkaline phosphatase (AP) superfamily is an ideal system to use in making such comparisons given the extensive data available on both nonenzymatic and enzymatic phosphoryl transfer reactions. Some superfamily members, such as AP itself, preferentially hydrolyze phosphate monoesters, whereas others, such as nucleotide pyrophosphatase/phosphodiesterase (NPP), preferentially hydrolyze phosphate diesters. We have measured rate constants for NPP-catalyzed hydrolysis of phosphate diesters and monoesters. NPP preferentially catalyzes diester hydrolysis by factors of 10(2)-10(6), depending on the identity of the diester substrate. To identify features of the NPP active site that could lead to preferential phosphate diester hydrolysis, we have determined the structure of NPP in the absence of ligands and in complexes with vanadate and AMP. Comparisons to existing structures of AP reveal bimetallo cores that are structurally indistinguishable, but there are several distinct structural features outside of the conserved bimetallo site. The structural and functional data together suggest that some of these distinct functional groups provide specific substrate binding interactions, whereas others tune the properties of the bimetallo active site itself to discriminate between phosphate diester and monoester substrates.
About this Structure
2GSO is a Single protein structure of sequence from Xanthomonas axonopodis pv. citri str. 306. Full crystallographic information is available from OCA.
Reference
Structural and functional comparisons of nucleotide pyrophosphatase/phosphodiesterase and alkaline phosphatase: implications for mechanism and evolution., Zalatan JG, Fenn TD, Brunger AT, Herschlag D, Biochemistry. 2006 Aug 15;45(32):9788-803. PMID:16893180
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