4bqz

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{{STRUCTURE_4bqz| PDB=4bqz | SCENE= }}
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==Rat NTPDase2 in complex with Mg GMPPNP==
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===Rat NTPDase2 in complex with Mg GMPPNP===
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<StructureSection load='4bqz' size='340' side='right' caption='[[4bqz]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23830739}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4bqz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BQZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BQZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4br0|4br0]], [[4br2|4br2]], [[4br4|4br4]], [[4br5|4br5]], [[4br7|4br7]], [[4br9|4br9]], [[4bra|4bra]], [[4brc|4brc]], [[4brd|4brd]], [[4bre|4bre]], [[4brf|4brf]], [[4brg|4brg]], [[4brh|4brh]], [[4bri|4bri]], [[4brk|4brk]], [[4brl|4brl]], [[4brm|4brm]], [[4brn|4brn]], [[4bro|4bro]], [[4brp|4brp]], [[4brq|4brq]], [[3cj1|3cj1]], [[3cj7|3cj7]], [[3cj9|3cj9]], [[3cja|3cja]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Apyrase Apyrase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.5 3.6.1.5] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bqz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4bqz RCSB], [http://www.ebi.ac.uk/pdbsum/4bqz PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In vertebrates, membrane-bound ecto-nucleoside triphosphate diphosphohydrolases (NTPDases) on the cell surface are responsible for signal conversion and termination in purinergic signaling by extracellular nucleotides. Here we present apo and complex structures of the rat NTPDase2 extracellular domain and Legionella pneumophila NTPDase1, including a high-resolution structure with a transition-state analog. Comparison of ATP and ADP binding modes shows how NTPDases engage the same catalytic site for hydrolysis of nucleoside triphosphates and diphosphates. We find that this dual specificity is achieved at the expense of base specificity. Structural and mutational studies indicate that a conserved active-site water is replaced by the phosphate product immediately after phosphoryl transfer. Partial base specificity for purines in LpNTPDase1 is based on a different intersubunit base binding site for pyrimidine bases. A comparison of the bacterial enzyme in six independent crystal forms shows that NTPDases can undergo a domain closure motion of at least 17 degrees .
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==About this Structure==
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Crystallographic Snapshots along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases.,Zebisch M, Krauss M, Schafer P, Lauble P, Strater N Structure. 2013 Jul 2. pii: S0969-2126(13)00200-1. doi:, 10.1016/j.str.2013.05.016. PMID:23830739<ref>PMID:23830739</ref>
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[[4bqz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BQZ OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023830739</ref><references group="xtra"/><references/>
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</div>
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==See Also==
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*[[Ectonucleoside triphosphate diphosphohydrolase|Ectonucleoside triphosphate diphosphohydrolase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Apyrase]]
[[Category: Apyrase]]
[[Category: Buffalo rat]]
[[Category: Buffalo rat]]
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[[Category: Lauble, P.]]
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[[Category: Lauble, P]]
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[[Category: Schaefer, P.]]
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[[Category: Schaefer, P]]
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[[Category: Straeter, N.]]
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[[Category: Straeter, N]]
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[[Category: Zebisch, M.]]
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[[Category: Zebisch, M]]
[[Category: Adpase]]
[[Category: Adpase]]
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[[Category: Apyrase]]
 
[[Category: Atpase]]
[[Category: Atpase]]
[[Category: Cd39]]
[[Category: Cd39]]

Revision as of 12:21, 4 January 2015

Rat NTPDase2 in complex with Mg GMPPNP

4bqz, resolution 2.05Å

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