4kge

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{{STRUCTURE_4kge| PDB=4kge | SCENE= }}
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==Crystal structure of near-infrared fluorescent protein with an extended stokes shift, pH 4.5==
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===Crystal structure of near-infrared fluorescent protein with an extended stokes shift, pH 4.5===
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<StructureSection load='4kge' size='340' side='right' caption='[[4kge]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23677204}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4kge]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KGE FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRQ:{(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>NRQ</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4kgf|4kgf]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kge OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kge RCSB], [http://www.ebi.ac.uk/pdbsum/4kge PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Most GFP-like fluorescent proteins exhibit small Stokes shifts (10-45 nm) due to rigidity of the chromophore environment that excludes non-fluorescent relaxation to a ground state. An unusual near-infrared derivative of the red fluorescent protein mKate, named TagRFP675, exhibits the Stokes shift, which is 30 nm extended comparing to that of the parental protein. In physiological conditions, TagRFP675 absorbs at 598 nm and emits at 675 nm that makes it the most red-shifted protein of the GFP-like protein family. In addition, its emission maximum strongly depends on the excitation wavelength. Structures of TagRFP675 revealed the common DsRed-like chromophore, which, however, interacts with the protein matrix via an extensive network of hydrogen bonds capable of large flexibility. Based on the spectroscopic, biochemical, and structural analysis we suggest that the rearrangement of the hydrogen bond interactions between the chromophore and the protein matrix is responsible for the TagRFP675 spectral properties.
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==About this Structure==
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Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant.,Piatkevich KD, Malashkevich VN, Morozova KS, Nemkovich NA, Almo SC, Verkhusha VV Sci Rep. 2013;3:1847. doi: 10.1038/srep01847. PMID:23677204<ref>PMID:23677204</ref>
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[[4kge]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synthetic_construct_sequences Synthetic construct sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KGE OCA].
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
==See Also==
==See Also==
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:023677204</ref><references group="xtra"/><references/>
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__TOC__
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</StructureSection>
[[Category: Synthetic construct sequences]]
[[Category: Synthetic construct sequences]]
[[Category: Almo, S C]]
[[Category: Almo, S C]]
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[[Category: Malashkevich, V N.]]
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[[Category: Malashkevich, V N]]
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[[Category: NYSGRC, New York Structural Genomics Research Consortium.]]
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[[Category: Structural genomic]]
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[[Category: Piatkevich, K.]]
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[[Category: Piatkevich, K]]
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[[Category: Verkhusha, V.]]
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[[Category: Verkhusha, V]]
[[Category: Fluorescent protein]]
[[Category: Fluorescent protein]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
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[[Category: New york structural genomics research consortium]]
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[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
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[[Category: New york structural genomix researchconsortium]]
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[[Category: Nysgrc]]
[[Category: Nysgrc]]
[[Category: Proteinstructure initiative]]
[[Category: Proteinstructure initiative]]
[[Category: Psi-biology]]
[[Category: Psi-biology]]
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[[Category: Structural genomic]]
 

Revision as of 12:40, 4 January 2015

Crystal structure of near-infrared fluorescent protein with an extended stokes shift, pH 4.5

4kge, resolution 2.30Å

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