4hep

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{{STRUCTURE_4hep| PDB=4hep | SCENE= }}
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==Complex of lactococcal phage TP901-1 with a llama vHH (vHH17) binder (nanobody)==
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===Complex of lactococcal phage TP901-1 with a llama vHH (vHH17) binder (nanobody)===
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<StructureSection load='4hep' size='340' side='right' caption='[[4hep]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23530214}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4hep]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_phage_tp901-1 Lactococcus phage tp901-1] and [http://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HEP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HEP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ejc|3ejc]], [[3hg0|3hg0]], [[3f0c|3f0c]], [[4hem|4hem]], [[4ios|4ios]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bpp, ORF49 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35345 Lactococcus phage TP901-1])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hep OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hep RCSB], [http://www.ebi.ac.uk/pdbsum/4hep PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Lactococcal phages belong to a large family of Siphoviridae and infect Lactococcus lactis, a gram-positive bacterium used in commercial dairy fermentations. These phages are believed to recognize and bind specifically to pellicle polysaccharides covering the entire bacterium. The phage TP901-1 baseplate, located at the tip of the tail, harbors 18 trimeric receptor binding proteins (RBPs) promoting adhesion to a specific lactococcal strain. Phage TP901-1 adhesion does not require major conformational changes or Ca(2+), which contrasts other lactococcal phages. Here, we produced and characterized llama nanobodies raised against the purified baseplate and the Tal protein of phage TP901-1 as tools to dissect the molecular determinants of phage TP901-1 infection. Using a set of complementary techniques, surface plasmon resonance, EM, and X-ray crystallography in a hybrid approach, we identified binders to the three components of the baseplate, analyzed their affinity for their targets, and determined their epitopes as well as their functional impact on TP901-1 phage infectivity. We determined the X-ray structures of three nanobodies in complex with the RBP. Two of them bind to the saccharide binding site of the RBP and are able to fully neutralize TP901-1 phage infectivity, even after 15 passages. These results provide clear evidence for a practical use of nanobodies in circumventing lactococcal phages viral infection in dairy fermentation.
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==About this Structure==
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Viral infection modulation and neutralization by camelid nanobodies.,Desmyter A, Farenc C, Mahony J, Spinelli S, Bebeacua C, Blangy S, Veesler D, van Sinderen D, Cambillau C Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):E1371-9. doi:, 10.1073/pnas.1301336110. Epub 2013 Mar 25. PMID:23530214<ref>PMID:23530214</ref>
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[[4hep]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_phage_tp901-1 Lactococcus phage tp901-1] and [http://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HEP OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023530214</ref><references group="xtra"/><references/>
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</div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Lactococcus phage tp901-1]]
[[Category: Lactococcus phage tp901-1]]
[[Category: Lama glama]]
[[Category: Lama glama]]
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[[Category: Bebeacua, C.]]
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[[Category: Bebeacua, C]]
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[[Category: Blangy, S.]]
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[[Category: Blangy, S]]
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[[Category: Cambillau, C.]]
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[[Category: Cambillau, C]]
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[[Category: Desmyter, A.]]
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[[Category: Desmyter, A]]
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[[Category: Farenc, C.]]
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[[Category: Farenc, C]]
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[[Category: Mahony, J.]]
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[[Category: Mahony, J]]
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[[Category: Sinderen, D van.]]
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[[Category: Sinderen, D van]]
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[[Category: Spinelli, S.]]
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[[Category: Spinelli, S]]
[[Category: Alpha-beta]]
[[Category: Alpha-beta]]
[[Category: Cell adhesion-immune system complex]]
[[Category: Cell adhesion-immune system complex]]

Revision as of 13:12, 4 January 2015

Complex of lactococcal phage TP901-1 with a llama vHH (vHH17) binder (nanobody)

4hep, resolution 1.75Å

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