4o1r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_4o1r| PDB=4o1r | SCENE= }}
+
==Crystal structure of NpuDnaB intein==
-
===Crystal structure of NpuDnaB intein===
+
<StructureSection load='4o1r' size='340' side='right' caption='[[4o1r]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_24574026}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4o1r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nosp7 Nosp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O1R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4O1R FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Npun_F2831 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4o1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4o1r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4o1r RCSB], [http://www.ebi.ac.uk/pdbsum/4o1r PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Protein splicing is an autocatalytic process involving self-excision of an internal protein domain, the intein, and concomitant ligation of the two flanking sequences, the exteins, with a peptide bond. Protein splicing can also take place in trans by naturally split inteins or artificially split inteins, ligating the exteins on two different polypeptide chains into one polypeptide chain. Protein trans-splicing could work in foreign contexts by replacing the native extein sequences with other protein sequences. Protein ligation using protein trans-splicing increasingly becomes a useful tool for biotechnological applications such as semi-synthesis of proteins, segmental isotopic labeling, and in vivo protein engineering. However, only a few split inteins have been successfully applied for protein ligation. Naturally split inteins have been widely used, but they are cross-reactive to each other, limiting their applications to multiple-fragment ligation. Based on the three-dimensional structures including two newly determined intein structures, we derived 21 new split inteins from four highly efficient cis-splicing inteins, in order to develop novel split inteins suitable for protein ligation. We systematically compared trans-splicing of 24 split inteins and tested the cross-activities among them to identify orthogonal split intein fragments that could be used in chemical biology and biotechnological applications.
-
==About this Structure==
+
Structure-based engineering and comparison of novel split inteins for protein ligation.,Aranko AS, Oeemig JS, Zhou D, Kajander T, Wlodawer A, Iwai H Mol Biosyst. 2014 Feb 26. PMID:24574026<ref>PMID:24574026</ref>
-
[[4o1r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nosp7 Nosp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4O1R OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:024574026</ref><references group="xtra"/><references/>
+
</div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Nosp7]]
[[Category: Nosp7]]
-
[[Category: Aranko, A S.]]
+
[[Category: Aranko, A S]]
-
[[Category: Iwai, H.]]
+
[[Category: Iwai, H]]
-
[[Category: Kajander, T.]]
+
[[Category: Kajander, T]]
-
[[Category: Oeemig, J S.]]
+
[[Category: Oeemig, J S]]
-
[[Category: Wlodawer, A.]]
+
[[Category: Wlodawer, A]]
-
[[Category: Zhou, D.]]
+
[[Category: Zhou, D]]
[[Category: Splicing]]
[[Category: Splicing]]

Revision as of 08:59, 5 January 2015

Crystal structure of NpuDnaB intein

4o1r, resolution 1.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools