Odorant binding protein

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======BmorPBP ligand and ligand binding======
======BmorPBP ligand and ligand binding======
The protein natural ligand is the moth pheromone <scene name='68/683383/Bombykol_ligand_in_2p71/1'>Bombykol</scene>. However, it was demonstrated that other molecules can also bound to the protein cavity <ref>doi: 10.1016/j.str.2007.07.013</ref>. The interaction with the ligand is beeing made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity <ref>doi: 10.1016/S1074-5521(00)00078-8</ref>.
The protein natural ligand is the moth pheromone <scene name='68/683383/Bombykol_ligand_in_2p71/1'>Bombykol</scene>. However, it was demonstrated that other molecules can also bound to the protein cavity <ref>doi: 10.1016/j.str.2007.07.013</ref>. The interaction with the ligand is beeing made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity <ref>doi: 10.1016/S1074-5521(00)00078-8</ref>.
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The hydroxyl group of the pheromone bombykol forms a <scene name='68/683383/Ser56_interaction_with_oxg/1'>hydrogen bond with the sidechain of Ser56</scene>, oxygens are in puple, Ser56 in red (O–O distance of 2.8 Å).
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Inside the binding cavity, <scene name='68/683383/Residues_interacting/1'>non-charged residues</scene> are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (in green), and the rest are conserved in lepidopteran PBP only (in light blue).
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In addition, the hydroxyl group of the pheromone bombykol forms a <scene name='68/683383/Ser56_interaction_with_oxg/1'>hydrogen bond with the sidechain of Ser56</scene>, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).
======Protein conformations======
======Protein conformations======

Revision as of 16:48, 10 January 2015

Contents

Introduction

Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla.

The first OBP that was identified is Bovine odorant binding protein, that was isolated from a cow's mucus ref. Though functunaly same, vertebrates and insects OBP are stucture and different.

OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly Drosophila melanogaster is required for the detection of the pheromone vaccenyl acetate [Ha and Smith, 2006; Xu et al., 2005] and has been proven to adopt a conformation that activates the odorant receptor [Laughlin et al., 2008].

Bombykol, a sex pheromone of Bombyx mori, from PubChem
Bombykol, a sex pheromone of Bombyx mori, from PubChem

OBP in insects

OBP Function

Despite three decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute [1][2].

A few functions have been suggested for OBP: 1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.

2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.

3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.

4. Mediating the deactivation of the odorant molecule after the activation of the receptor.

5. An organic anion (the protein has 9 negative charges).

Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.

In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated Bombyx mori PBP: BmorPBP.

PBP

PBPs are specialized members of the insect odorant-binding protein (OBP) super-family, and they are devided into three groups by their lengths: long-chain PBPs (∼160 aa), medium-chain PBPs (∼120 aa), and short-chain PBPs (∼110 aa) [3]

Bombyx mori BmorPBP (lets talk about sex..)

PDB ID 1ls8

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See also

References

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