This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2of8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:2of8.jpg|left|200px]]<br /><applet load="2of8" size="350" color="white" frame="true" align="right" spinBox="true"
+
[[Image:2of8.jpg|left|200px]]
-
caption="2of8, resolution 1.05&Aring;" />
+
 
-
'''Crystal structure of AVR4 (D39A/C122S)-BNA complex'''<br />
+
{{Structure
 +
|PDB= 2of8 |SIZE=350|CAPTION= <scene name='initialview01'>2of8</scene>, resolution 1.05&Aring;
 +
|SITE= <scene name='pdbsite=AC1:Bni+Binding+Site+For+Residue+B+501'>AC1</scene>, <scene name='pdbsite=AC2:Bni+Binding+Site+For+Residue+A+502'>AC2</scene>, <scene name='pdbsite=AC3:Fmt+Binding+Site+For+Residue+A+401'>AC3</scene>, <scene name='pdbsite=AC4:Fmt+Binding+Site+For+Residue+B+402'>AC4</scene>, <scene name='pdbsite=AC5:Fmt+Binding+Site+For+Residue+B+403'>AC5</scene>, <scene name='pdbsite=AC6:Fmt+Binding+Site+For+Residue+A+404'>AC6</scene>, <scene name='pdbsite=AC7:Fmt+Binding+Site+For+Residue+A+405'>AC7</scene>, <scene name='pdbsite=AC8:Fmt+Binding+Site+For+Residue+A+406'>AC8</scene>, <scene name='pdbsite=AC9:Fmt+Binding+Site+For+Residue+A+407'>AC9</scene>, <scene name='pdbsite=BC1:Fmt+Binding+Site+For+Residue+B+408'>BC1</scene>, <scene name='pdbsite=BC2:Fmt+Binding+Site+For+Residue+A+409'>BC2</scene>, <scene name='pdbsite=BC3:Fmt+Binding+Site+For+Residue+A+410'>BC3</scene> and <scene name='pdbsite=BC4:Fmt+Binding+Site+For+Residue+A+411'>BC4</scene>
 +
|LIGAND= <scene name='pdbligand=BNI:5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC+ACID+(4-NITRO-PHENYL)-AMIDE'>BNI</scene> and <scene name='pdbligand=FMT:FORMIC ACID'>FMT</scene>
 +
|ACTIVITY=
 +
|GENE= AVR4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 Gallus gallus])
 +
}}
 +
 
 +
'''Crystal structure of AVR4 (D39A/C122S)-BNA complex'''
 +
 
==About this Structure==
==About this Structure==
-
2OF8 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] with <scene name='pdbligand=BNI:'>BNI</scene> and <scene name='pdbligand=FMT:'>FMT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Bni+Binding+Site+For+Residue+B+501'>AC1</scene>, <scene name='pdbsite=AC2:Bni+Binding+Site+For+Residue+A+502'>AC2</scene>, <scene name='pdbsite=AC3:Fmt+Binding+Site+For+Residue+A+401'>AC3</scene>, <scene name='pdbsite=AC4:Fmt+Binding+Site+For+Residue+B+402'>AC4</scene>, <scene name='pdbsite=AC5:Fmt+Binding+Site+For+Residue+B+403'>AC5</scene>, <scene name='pdbsite=AC6:Fmt+Binding+Site+For+Residue+A+404'>AC6</scene>, <scene name='pdbsite=AC7:Fmt+Binding+Site+For+Residue+A+405'>AC7</scene>, <scene name='pdbsite=AC8:Fmt+Binding+Site+For+Residue+A+406'>AC8</scene>, <scene name='pdbsite=AC9:Fmt+Binding+Site+For+Residue+A+407'>AC9</scene>, <scene name='pdbsite=BC1:Fmt+Binding+Site+For+Residue+B+408'>BC1</scene>, <scene name='pdbsite=BC2:Fmt+Binding+Site+For+Residue+A+409'>BC2</scene>, <scene name='pdbsite=BC3:Fmt+Binding+Site+For+Residue+A+410'>BC3</scene> and <scene name='pdbsite=BC4:Fmt+Binding+Site+For+Residue+A+411'>BC4</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OF8 OCA].
+
2OF8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OF8 OCA].
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
[[Category: Single protein]]
[[Category: Single protein]]
Line 19: Line 28:
[[Category: streptavidin]]
[[Category: streptavidin]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:17:50 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:58:56 2008''

Revision as of 15:58, 20 March 2008


PDB ID 2of8

Drag the structure with the mouse to rotate
, resolution 1.05Å
Sites: , , , , , , , , , , , and
Ligands: and
Gene: AVR4 (Gallus gallus)
Coordinates: save as pdb, mmCIF, xml



Crystal structure of AVR4 (D39A/C122S)-BNA complex


About this Structure

2OF8 is a Single protein structure of sequence from Gallus gallus. Full crystallographic information is available from OCA.

Page seeded by OCA on Thu Mar 20 17:58:56 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools