RiAFP

spinqualitylabelsall models Insect antifreeze protein (PDB code 4dt5). Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

Antifreeze proteins (AFPs) evolved in various organisms permitting their survival in subzero environments^[1]. They exhibit remarkable structural diversity and molar activities across the various kingdoms^[2]. The longhorn beetle, Rhagium inquisitor, has the ability to supercool to below -25 °C partially due to the presence of a highly potent AFP (RiAFP) in its hemolymph. RiAFP is a 13-kDa protein with one of the highest antifreeze activities measured for any AFP.

Contents 1 Function 2 Overall Structure 3 Ice Binding Surface (IBS) 4 Molecular Basis for Ice Binding 5 Function 6 Relevance 7 Structural highlights

Function

RiAFP, like other AFPs, adsorb to the surface of ice crystals and lower the temperature at which these crystals grow. Consequently, creating a difference between the melting point and the freezing point known as thermal hysteresis (TH), within which the ice growth is arrested^[3].

Overall Structure

The crystallographic structure of RiAFP was defined recently^[4]. RiAFP has a novel β-solenoid architecture that forms . This sandwich is composed of two parallel remarkably regular . The β-sheets lie on top of each other with the upper and lower strands parallel but in the opposite orientation. Two ends deviate from β helix regularity by forming (see Figure 1). These capping structures help to prevent end-to-end associations that would spoil the solubility of RiAFP and lead to oligomerization and aggregation.

The three residues in β-strand 11 at the C terminus that are too bulky to be accommodated into the core may also contribute to the capping structure to prevent amyloid-like polymerization. RiAFP solenoid possesses compressed nature with average distance between the sheets of only 6 Å. In the core of RiAFP, the side chains within apposed β-strands from the two β-sheets are staggered, allowing the side chains to interdigitate and pack tightly against one another. Most of the in the core are from Ala, Ser and Thr. Those residues create a more compact fold that may contribute to the high stability and antifreeze activity of RiAFP. Within the core there are between Thr-Ser (65-55, 85-75, 132-124 respectively) and one between Cys4-Cys21, that contributes to stabilization of the whole structure. The β-turns in the structure contain mostly Gly or Pro residues. The asymmetric unit comprises two RiAFP molecules juxtaposed with their ice-binding surfaces, however the protein is monomer in the solutio

Ice Binding Surface (IBS)

IBS of RiAFP contains five expanded within the top β–sheet. These motifs are remarkably regular, allowing any rows/columns of TXTXTXT motifs to be exactly superposed onto any other rows/columns. Threonine residuses are crucial for maintaining antifreeze activity. It was found in other AFPs that mutations of the Thrs within these motifs decrease the thermal hysteresis. The Thr hydroxyls define a large flat IBS of 420 Å2, which correlates with high antifreeze activity.

Molecular Basis for Ice Binding

Function

Relevance

Structural highlights