Tachyplesin

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The sequence adapts an antiparallel β-sheet (hairpin) conformation in solution, with a <scene name='67/671725/Beta_turn_tp-1/2'>β-turn</scene> for the centrally located residues <scene name='67/671725/Tyrargglyile/3'>Tyr-Arg-Gly-Ile</scene>, stabilized by two cross-strand <scene name='67/671725/Disulfide_bonds/4'> disulfide bonds </scene> between Cys³-Cys¹⁶ and Cys⁷-Cys¹²<ref name=Saravanan>PMID:22464970</ref><ref name=Nakamura>Nakamura, Takanori, et al. "Tachyplesin, a class of antimicrobial peptide from the hemocytes of the horseshoe crab (''Tachypleus tridentatus''). Isolation and chemical structure." Journal of Biological Chemistry 263.32 (1988): 16709-16713</ref>, and [http://en.wikipedia.org/wiki/Protein_primary_structure C-terminus amidation]. In addition there are H-bonds and aromatic rings stacking interactions which helps stabilize the hairpin loop structure of the peptide.
The sequence adapts an antiparallel β-sheet (hairpin) conformation in solution, with a <scene name='67/671725/Beta_turn_tp-1/2'>β-turn</scene> for the centrally located residues <scene name='67/671725/Tyrargglyile/3'>Tyr-Arg-Gly-Ile</scene>, stabilized by two cross-strand <scene name='67/671725/Disulfide_bonds/4'> disulfide bonds </scene> between Cys³-Cys¹⁶ and Cys⁷-Cys¹²<ref name=Saravanan>PMID:22464970</ref><ref name=Nakamura>Nakamura, Takanori, et al. "Tachyplesin, a class of antimicrobial peptide from the hemocytes of the horseshoe crab (''Tachypleus tridentatus''). Isolation and chemical structure." Journal of Biological Chemistry 263.32 (1988): 16709-16713</ref>, and [http://en.wikipedia.org/wiki/Protein_primary_structure C-terminus amidation]. In addition there are H-bonds and aromatic rings stacking interactions which helps stabilize the hairpin loop structure of the peptide.
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[http://en.wikipedia.org/wiki/Nuclear_magnetic_resonance NMR] studies have shown that TP-I undergoes a conformational change in <scene name='67/671725/Tp_i_in_the_presence_of_lps/1'>presence of LPS </scene><scene name='67/671725/Conformation_change/8'>making it more rigid and twisted, than in the presence of water</scene><ref name=Kushibiki>PMID:24389234</ref>. Specifically, residues located in N and C termini of TP-I are involved in binding to LPS. In addition fluroscence studies have shown that <scene name='67/671725/Conformation_change/10'>Trp residue</scene> in the hydrofobic environment of LPS. Besides this, β-strands of TP-I seems to extend and become more rigid thus stabilizing the structure of peptide. This change in structure of TP-I in presence of LPS seems to be crucial for its activity, since rearrangement of TP-I makes it more amphiphilic to negatively charged membrane of bacteria and fungus.
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[http://en.wikipedia.org/wiki/Nuclear_magnetic_resonance NMR] studies have shown that TP-I undergoes a conformational change in <scene name='67/671725/Tp_i_in_the_presence_of_lps/1'>presence of LPS, </scene><scene name='67/671725/Conformation_change/8'>making it more rigid and twisted than in the presence of water</scene><ref name=Kushibiki>PMID:24389234</ref>. Specifically, residues located in N and C termini of TP-I are involved in binding to LPS. In addition fluroscence studies have shown that <scene name='67/671725/Conformation_change/10'>Trp residue</scene> in the hydrofobic environment of LPS. Besides this, β-strands of TP-I seems to extend and become more rigid thus stabilizing the structure of peptide. This change in structure of TP-I in presence of LPS seems to be crucial for its activity, since rearrangement of TP-I makes it more amphiphilic to negatively charged membrane of bacteria and fungus.
In the wild type TP-I,<scene name='67/671725/Conformation_change/9'> Arg 5 and Arg 14</scene>, provides this by acting as hinges.<ref name=Laederach>PMID:12369825</ref>
In the wild type TP-I,<scene name='67/671725/Conformation_change/9'> Arg 5 and Arg 14</scene>, provides this by acting as hinges.<ref name=Laederach>PMID:12369825</ref>

Revision as of 16:56, 23 January 2015

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References

  1. 1.0 1.1 1.2 1.3 Laederach A, Andreotti AH, Fulton DB. Solution and micelle-bound structures of tachyplesin I and its active aromatic linear derivatives. Biochemistry. 2002 Oct 15;41(41):12359-68. PMID:12369825
  2. 2.0 2.1 Chen, Yixin, et al. "RGD-Tachyplesin inhibits tumor growth." Cancer research 61.6 (2001): 2434-2438.‏
  3. 3.0 3.1 Saravanan R, Mohanram H, Joshi M, Domadia PN, Torres J, Ruedl C, Bhattacharjya S. Structure, activity and interactions of the cysteine deleted analog of tachyplesin-1 with lipopolysaccharide micelle: Mechanistic insights into outer-membrane permeabilization and endotoxin neutralization. Biochim Biophys Acta. 2012 Mar 23;1818(7):1613-1624. PMID:22464970 doi:10.1016/j.bbamem.2012.03.015
  4. Nakamura, Takanori, et al. "Tachyplesin, a class of antimicrobial peptide from the hemocytes of the horseshoe crab (Tachypleus tridentatus). Isolation and chemical structure." Journal of Biological Chemistry 263.32 (1988): 16709-16713
  5. 5.0 5.1 Kushibiki T, Kamiya M, Aizawa T, Kumaki Y, Kikukawa T, Mizuguchi M, Demura M, Kawabata SI, Kawano K. Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide. Biochim Biophys Acta. 2014 Jan 2;1844(3):527-534. doi:, 10.1016/j.bbapap.2013.12.017. PMID:24389234 doi:http://dx.doi.org/10.1016/j.bbapap.2013.12.017
  6. 6.0 6.1 6.2 Hong, Jun, et al. "Mechanism of Tachyplesin I injury to bacterial membranes and intracellular enzymes, determined by laser confocal scanning microscopy and flow cytometry." Microbiological research (2014).‏
  7. Yonezawa A, Kuwahara J, Fujii N, Sugiura Y. Binding of tachyplesin I to DNA revealed by footprinting analysis: significant contribution of secondary structure to DNA binding and implication for biological action. Biochemistry. 1992 Mar 24;31(11):2998-3004. PMID:1372516
  8. Lipsky A, Cohen A, Ion A, Yedidia I. Genetic transformation of Ornithogalum via particle bombardment and generation of Pectobacterium carotovorum-resistant plants. Plant Sci. 2014 Nov;228:150-8. doi: 10.1016/j.plantsci.2014.02.002. Epub 2014 Feb, 12. PMID:25438795 doi:http://dx.doi.org/10.1016/j.plantsci.2014.02.002
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