3dyi
From Proteopedia
(Difference between revisions)
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| - | + | ==Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism== | |
| - | + | <StructureSection load='3dyi' size='340' side='right' caption='[[3dyi]], [[Resolution|resolution]] 1.72Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_rhamnosus_hn001 Lactobacillus rhamnosus hn001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DYI FirstGlance]. <br> |
| - | [[3dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_rhamnosus_hn001 Lactobacillus rhamnosus hn001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYI OCA]. | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> |
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dkr|3dkr]], [[3dlt|3dlt]], [[3dyv|3dyv]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EstD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=486408 Lactobacillus rhamnosus HN001])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dyi RCSB], [http://www.ebi.ac.uk/pdbsum/3dyi PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/3dyi_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Lactobacillus rhamnosus hn001]] | [[Category: Lactobacillus rhamnosus hn001]] | ||
| - | [[Category: Bennett, M D | + | [[Category: Bennett, M D]] |
| - | [[Category: Delabre, M L | + | [[Category: Delabre, M L]] |
| - | [[Category: Holland, R | + | [[Category: Holland, R]] |
| - | [[Category: Norris, G E | + | [[Category: Norris, G E]] |
[[Category: Alpha beta hydrolase]] | [[Category: Alpha beta hydrolase]] | ||
[[Category: Catalytic triad]] | [[Category: Catalytic triad]] | ||
Revision as of 09:07, 25 January 2015
Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
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