Odorant binding protein

Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.

The main purpose in the adult moth's short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal- mating. This long journey begins when the female moth releases a sex pheromone, usually in specific hours in the night ^[6]. BmorPBP was first identified in the B. mori male antennae by Krieger et al. in 1996 ^[7], as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or Bombykol). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds^[8]).

BmorPBP structure and function

The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three disulfide bonds formed by residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with , which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.

BmorPBP - ligand binding

The protein natural ligand is the moth pheromone . However, it was demonstrated that other molecules can also bound to the protein cavity ^[9]. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity ^[10]. Inside the binding cavity, are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (in green), and the rest are conserved in lepidopteran PBP only (in light blue). In addition, the hydroxyl group of the pheromone bombykol forms a , Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).

Protein conformations

The A and B forms without ligand (PDB IDs: 1gm0 and 1ls8).

The A and B forms with ligand (PDB IDs: 1gm0 and 1ls8).

BmorPBP has two conformations: The "closed form" (A) and the "open form" (B)^[11]. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get's an alpha helix shape, and the protein is in its "close form" (B), whereas in the "open form" (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form ^[12], therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.

The is both pH and ligand dependent ^[13][14][15]. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.

Conformation transition mechanism:

The c-terminus of the protein bears mostly . Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP ^[16]. Of these, residues (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the , to the and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix^[17]. Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP^[4]. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects' OBPs.

Figure 1. The events prior the neuron excitation, following the "N model" suggested by Kaissling (2009)^[18] The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively). When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)

Receptor activation

Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.

• Activation by the pheromone alone

This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane ^[19], which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)^[18][20]