2ped
From Proteopedia
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| - | [[Image:2ped.gif|left|200px]] | + | [[Image:2ped.gif|left|200px]] |
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| - | '''Crystallographic model of 9-cis-rhodopsin''' | + | {{Structure |
| + | |PDB= 2ped |SIZE=350|CAPTION= <scene name='initialview01'>2ped</scene>, resolution 2.95Å | ||
| + | |SITE= | ||
| + | |LIGAND= <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene> and <scene name='pdbligand=HTG:HEPTYL 1-THIOHEXOPYRANOSIDE'>HTG</scene> | ||
| + | |ACTIVITY= | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''Crystallographic model of 9-cis-rhodopsin''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2PED is a [ | + | 2PED is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PED OCA]. |
==Reference== | ==Reference== | ||
| - | Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography., Nakamichi H, Buss V, Okada T, Biophys J. 2007 Jun 15;92(12):L106-8. Epub 2007 Apr 20. PMID:[http:// | + | Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography., Nakamichi H, Buss V, Okada T, Biophys J. 2007 Jun 15;92(12):L106-8. Epub 2007 Apr 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17449675 17449675] |
[[Category: Bos taurus]] | [[Category: Bos taurus]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: visual pigment]] | [[Category: visual pigment]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:11:57 2008'' |
Revision as of 16:12, 20 March 2008
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| , resolution 2.95Å | |||||||
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| Ligands: | , , , , , and | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystallographic model of 9-cis-rhodopsin
Overview
The primary photochemical process of the visual function has been investigated using the three crystallographic models, 11-cis-rhodopsin, all-trans-bathorhodopsin, and the artificial isomeric 9-cis-rhodopsin. Detailed examination of the atomic displacements and dihedral angle changes of the retinal chromophore involved in the interconversion among these isomers suggests the mechanism of isomerization efficiency.
About this Structure
2PED is a Single protein structure of sequence from Bos taurus. Full crystallographic information is available from OCA.
Reference
Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography., Nakamichi H, Buss V, Okada T, Biophys J. 2007 Jun 15;92(12):L106-8. Epub 2007 Apr 20. PMID:17449675
Page seeded by OCA on Thu Mar 20 18:11:57 2008
Categories: Bos taurus | Single protein | Nakamichi, H. | Okada, T. | ACE | HG | HTG | HTO | PLM | RET | ZN | G protein-coupled receptor | Rhodopsin | Signaling protein | Visual pigment
