4mps

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
{{STRUCTURE_4mps| PDB=4mps | SCENE= }}
+
==Crystal structure of rat Beta-galactoside alpha-2,6-sialyltransferase 1 (ST6GAL1), Northeast Structural Genomics Consortium Target RnR367A==
-
===Crystal structure of rat Beta-galactoside alpha-2,6-sialyltransferase 1 (ST6GAL1), Northeast Structural Genomics Consortium Target RnR367A===
+
<StructureSection load='4mps' size='340' side='right' caption='[[4mps]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_24155237}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4mps]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MPS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MPS FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rCG_36561, St6gal1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactoside_alpha-2,6-sialyltransferase Beta-galactoside alpha-2,6-sialyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.99.1 2.4.99.1] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mps OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4mps RCSB], [http://www.ebi.ac.uk/pdbsum/4mps PDBsum]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Glycan structures on glycoproteins and glycolipids play critical roles in biological recognition, targeting, and modulation of functions in animal systems. Many classes of glycan structures are capped with terminal sialic acid residues, which contribute to biological functions by either forming or masking glycan recognition sites on cell surface or secreted glycoconjugates. Sialylated glycans are synthesized in mammals by a single conserved family of sialyltransferases that have diverse linkage and acceptor specificities. We examined the enzymatic basis for glycan sialylation in animal systems by determining the crystal structure of rat ST6GAL1, an enzyme that creates terminal alpha2,6-sialic acid linkages on complex type N-glycans, at 2.4A resolution. Crystals were obtained from enzyme preparations generated in mammalian cells. The resulting structure revealed an overall protein fold broadly resembling the previously determined structure of pig ST3GAL1, including a CMP-sialic acid binding site assembled from conserved sialylmotif sequence elements. Significant differences in structure and disulfide bonding pattern were found outside the sialylmotif sequences, including differences in residues predicted to interact with the glycan acceptor. Computational substrate docking and molecular dynamics simulations were performed to predict and evaluate CMP-sialic acid donor and glycan acceptor interactions and the results were compared with kinetic analysis of active site mutants. Comparisons of the structure with pig ST3GAL1 and a bacterial sialyltransferase revealed a similar positioning of donor, acceptor, and catalytic residues that provide a common structural framework for catalysis by the mammalian and bacterial sialyltransferases.
-
==About this Structure==
+
Enzymatic basis for N-glycan sialylation: structure of rat alpha2,6-sialyltransferase (ST6GAL1) reveals conserved and unique features for glycan sialylation.,Meng L, Forouhar F, Thieker D, Gao Z, Ramiah A, Moniz H, Xiang Y, Seetharaman J, Milaninia S, Su M, Bridger R, Veillon L, Azadi P, Kornhaber G, Wells L, Montelione GT, Woods RJ, Tong L, Moremen KW J Biol Chem. 2013 Oct 23. PMID:24155237<ref>PMID:24155237</ref>
-
[[4mps]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MPS OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<ref group="xtra">PMID:024155237</ref><references group="xtra"/><references/>
+
</div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Beta-galactoside alpha-2,6-sialyltransferase]]
[[Category: Beta-galactoside alpha-2,6-sialyltransferase]]
[[Category: Buffalo rat]]
[[Category: Buffalo rat]]
-
[[Category: Forouhar, F.]]
+
[[Category: Forouhar, F]]
-
[[Category: Hunt, J F.]]
+
[[Category: Hunt, J F]]
-
[[Category: Kornhaber, G.]]
+
[[Category: Kornhaber, G]]
-
[[Category: Meng, L.]]
+
[[Category: Meng, L]]
-
[[Category: Milaninia, S.]]
+
[[Category: Milaninia, S]]
-
[[Category: Montelione, G T.]]
+
[[Category: Montelione, G T]]
-
[[Category: Moremen, K W.]]
+
[[Category: Moremen, K W]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Structural genomic]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Seetharaman, J]]
-
[[Category: Su, M.]]
+
[[Category: Su, M]]
-
[[Category: Tong, L.]]
+
[[Category: Tong, L]]
[[Category: 6-sialyltransferase 1]]
[[Category: 6-sialyltransferase 1]]
[[Category: Alpha-beta protein]]
[[Category: Alpha-beta protein]]
[[Category: Beta-galactoside alpha-2]]
[[Category: Beta-galactoside alpha-2]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
 
[[Category: Psi-biology]]
[[Category: Psi-biology]]
-
[[Category: Structural genomic]]
 
[[Category: Transferase]]
[[Category: Transferase]]

Revision as of 07:02, 15 February 2015

Crystal structure of rat Beta-galactoside alpha-2,6-sialyltransferase 1 (ST6GAL1), Northeast Structural Genomics Consortium Target RnR367A

4mps, resolution 2.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools