4s26

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'''Unreleased structure'''
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==Crystal structure of Arabidopsis thaliana ThiC with bound imidazole ribonucleotide, S-adenosylhomocysteine, Fe4S4 cluster and Zn (monoclinic crystal form)==
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<StructureSection load='4s26' size='340' side='right' caption='[[4s26]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4s26]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S26 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S26 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IRN:1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE'>IRN</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4n7q|4n7q]], [[3epm|3epm]], [[3epn|3epn]], [[3epo|3epo]], [[4s25|4s25]], [[4s27|4s27]], [[4s28|4s28]], [[4s29|4s29]], [[4s2a|4s2a]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphomethylpyrimidine_synthase Phosphomethylpyrimidine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.17 4.1.99.17] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s26 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s26 RCSB], [http://www.ebi.ac.uk/pdbsum/4s26 PDBsum]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/THIC_ARATH THIC_ARATH]] Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.<ref>PMID:18048325</ref> <ref>PMID:18332905</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Radical S-adenosylmethionine (SAM) enzymes use a [4Fe-4S] cluster to generate a 5'-deoxyadenosyl radical. Canonical radical SAM enzymes are characterized by a beta-barrel-like fold and SAM anchors to the differentiated iron of the cluster, which is located near the amino terminus and within the beta-barrel, through its amino and carboxylate groups. Here we show that ThiC, the thiamin pyrimidine synthase in plants and bacteria, contains a tethered cluster-binding domain at its carboxy terminus that moves in and out of the active site during catalysis. In contrast to canonical radical SAM enzymes, we predict that SAM anchors to an additional active site metal through its amino and carboxylate groups. Superimposition of the catalytic domains of ThiC and glutamate mutase shows that these two enzymes share similar active site architectures, thus providing strong evidence for an evolutionary link between the radical SAM and adenosylcobalamin-dependent enzyme superfamilies.
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The entry 4s26 is ON HOLD until Paper Publication
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Non-canonical active site architecture of the radical SAM thiamin pyrimidine synthase.,Fenwick MK, Mehta AP, Zhang Y, Abdelwahed SH, Begley TP, Ealick SE Nat Commun. 2015 Mar 27;6:6480. doi: 10.1038/ncomms7480. PMID:25813242<ref>PMID:25813242</ref>
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Authors: Fenwick, M.K., Mehta, A.P., Zhang, Y., Abdelwahed, S., Begley, T.P., Ealick, S.E.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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Description: Crystal structure of Arabidopsis thaliana ThiC with bound imidazole ribonucleotide, S-adenosylhomocysteine, Fe4S4 cluster and Zn (monoclinic crystal form)
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== References ==
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[[Category: Unreleased Structures]]
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<references/>
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[[Category: Begley, T.P]]
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__TOC__
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[[Category: Mehta, A.P]]
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</StructureSection>
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[[Category: Phosphomethylpyrimidine synthase]]
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[[Category: Abdelwahed, S]]
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[[Category: Begley, T P]]
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[[Category: Ealick, S E]]
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[[Category: Fenwick, M K]]
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[[Category: Mehta, A P]]
[[Category: Zhang, Y]]
[[Category: Zhang, Y]]
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[[Category: Fenwick, M.K]]
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[[Category: Adomet and glutamate mutase]]
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[[Category: Ealick, S.E]]
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[[Category: Alpha-beta barrel]]
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[[Category: Abdelwahed, S]]
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[[Category: Domain swapping]]
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[[Category: Iron-sulfur cluster]]
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[[Category: Lyase]]
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[[Category: Radical sam superfamily]]
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[[Category: Thiamin]]
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[[Category: Vitamin b1]]
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[[Category: Vitamin b12]]

Revision as of 11:09, 8 April 2015

Crystal structure of Arabidopsis thaliana ThiC with bound imidazole ribonucleotide, S-adenosylhomocysteine, Fe4S4 cluster and Zn (monoclinic crystal form)

4s26, resolution 1.85Å

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