2v81
From Proteopedia
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| - | [[Image:2v81.jpg|left|200px]] | + | [[Image:2v81.jpg|left|200px]] |
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| - | '''NATIVE KDPGAL STRUCTURE''' | + | {{Structure |
| + | |PDB= 2v81 |SIZE=350|CAPTION= <scene name='initialview01'>2v81</scene>, resolution 2.40Å | ||
| + | |SITE= | ||
| + | |LIGAND= | ||
| + | |ACTIVITY= [http://en.wikipedia.org/wiki/2-dehydro-3-deoxy-6-phosphogalactonate_aldolase 2-dehydro-3-deoxy-6-phosphogalactonate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.21 4.1.2.21] | ||
| + | |GENE= | ||
| + | }} | ||
| + | |||
| + | '''NATIVE KDPGAL STRUCTURE''' | ||
| + | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
| - | 2V81 is a [ | + | 2V81 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V81 OCA]. |
==Reference== | ==Reference== | ||
| - | Characterization and crystal structure of Escherichia coli KDPGal aldolase., Walters MJ, Srikannathasan V, McEwan AR, Naismith JH, Fierke CA, Toone EJ, Bioorg Med Chem. 2008 Jan 15;16(2):710-20. Epub 2007 Oct 18. PMID:[http:// | + | Characterization and crystal structure of Escherichia coli KDPGal aldolase., Walters MJ, Srikannathasan V, McEwan AR, Naismith JH, Fierke CA, Toone EJ, Bioorg Med Chem. 2008 Jan 15;16(2):710-20. Epub 2007 Oct 18. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17981470 17981470] |
[[Category: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase]] | [[Category: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase]] | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
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[[Category: lyase]] | [[Category: lyase]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:43:58 2008'' |
Revision as of 16:44, 20 March 2008
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| , resolution 2.40Å | |||||||
|---|---|---|---|---|---|---|---|
| Activity: | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, with EC number 4.1.2.21 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
NATIVE KDPGAL STRUCTURE
Overview
2-Keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-3-deoxy-6-phosphogalactonate (KDPGal) aldolases catalyze an identical reaction differing in substrate specificity in only the configuration of a single stereocenter. However, the proteins show little sequence homology at the amino acid level. Here we investigate the determinants of substrate selectivity of these enzymes. The Escherichia coli KDPGal aldolase gene, cloned into a T7 expression vector and overexpressed in E. coli, catalyzes retro-aldol cleavage of the natural substrate, KDPGal, with values of k(cat)/K(M) and k(cat) of 1.9x10(4)M(-1)s(-1) and 4s(-1), respectively. In the synthetic direction, KDPGal aldolase efficiently catalyzes an aldol addition using a limited number of aldehyde substrates, including d-glyceraldehyde-3-phosphate (natural substrate), d-glyceraldehyde, glycolaldehyde, and 2-pyridinecarboxaldehyde. A preparative scale reaction between 2-pyridinecarboxaldehyde and pyruvate catalyzed by KDPGal aldolase produced the aldol adduct of the R stereochemistry in >99.7% ee, a result complementary to that observed using the related KDPG aldolase. The native crystal structure has been solved to a resolution of 2.4A and displays the same (alpha/beta)(8) topology, as KDPG aldolase. We have also determined a 2.1A structure of a Schiff base complex between the enzyme and its substrate. This model predicts that a single amino acid change, T161 in KDPG aldolase to V154 in KDPGal aldolase, plays an important role in determining the stereochemical course of enzyme catalysis and this prediction was borne out by site-directed mutagenesis studies. However, additional changes in the enzyme sequence are required to prepare an enzyme with both high catalytic efficiency and altered stereochemistry.
About this Structure
2V81 is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Characterization and crystal structure of Escherichia coli KDPGal aldolase., Walters MJ, Srikannathasan V, McEwan AR, Naismith JH, Fierke CA, Toone EJ, Bioorg Med Chem. 2008 Jan 15;16(2):710-20. Epub 2007 Oct 18. PMID:17981470
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