2vb1

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[[Image:2vb1.jpg|left|200px]]<br /><applet load="2vb1" size="350" color="white" frame="true" align="right" spinBox="true"
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[[Image:2vb1.jpg|left|200px]]
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caption="2vb1, resolution 0.65&Aring;" />
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'''HEWL AT 0.65 ANGSTROM RESOLUTION'''<br />
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{{Structure
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|PDB= 2vb1 |SIZE=350|CAPTION= <scene name='initialview01'>2vb1</scene>, resolution 0.65&Aring;
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|SITE= <scene name='pdbsite=AC1:Act+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Edo+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Edo+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Edo+Binding+Site+For+Chain+A'>AC4</scene>, <scene name='pdbsite=AC5:No3+Binding+Site+For+Chain+A'>AC5</scene>, <scene name='pdbsite=AC6:No3+Binding+Site+For+Chain+A'>AC6</scene>, <scene name='pdbsite=AC7:No3+Binding+Site+For+Chain+A'>AC7</scene>, <scene name='pdbsite=AC8:No3+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:No3+Binding+Site+For+Chain+A'>AC9</scene>, <scene name='pdbsite=BC1:No3+Binding+Site+For+Chain+A'>BC1</scene>, <scene name='pdbsite=BC2:No3+Binding+Site+For+Chain+A'>BC2</scene>, <scene name='pdbsite=BC3:No3+Binding+Site+For+Chain+A'>BC3</scene> and <scene name='pdbsite=BC4:No3+Binding+Site+For+Chain+A'>BC4</scene>
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|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene> and <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
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|ACTIVITY= [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]
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|GENE=
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}}
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'''HEWL AT 0.65 ANGSTROM RESOLUTION'''
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==Overview==
==Overview==
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==About this Structure==
==About this Structure==
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2VB1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] with <scene name='pdbligand=ACT:'>ACT</scene>, <scene name='pdbligand=NO3:'>NO3</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] Known structural/functional Sites: <scene name='pdbsite=AC1:Act+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Edo+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Edo+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Edo+Binding+Site+For+Chain+A'>AC4</scene>, <scene name='pdbsite=AC5:No3+Binding+Site+For+Chain+A'>AC5</scene>, <scene name='pdbsite=AC6:No3+Binding+Site+For+Chain+A'>AC6</scene>, <scene name='pdbsite=AC7:No3+Binding+Site+For+Chain+A'>AC7</scene>, <scene name='pdbsite=AC8:No3+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:No3+Binding+Site+For+Chain+A'>AC9</scene>, <scene name='pdbsite=BC1:No3+Binding+Site+For+Chain+A'>BC1</scene>, <scene name='pdbsite=BC2:No3+Binding+Site+For+Chain+A'>BC2</scene>, <scene name='pdbsite=BC3:No3+Binding+Site+For+Chain+A'>BC3</scene> and <scene name='pdbsite=BC4:No3+Binding+Site+For+Chain+A'>BC4</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA].
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2VB1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VB1 OCA].
==Reference==
==Reference==
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Triclinic lysozyme at 0.65 A resolution., Wang J, Dauter M, Alkire R, Joachimiak A, Dauter Z, Acta Crystallogr D Biol Crystallogr. 2007 Dec;63(Pt 12):1254-68. Epub 2007, Nov 16. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18084073 18084073]
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Triclinic lysozyme at 0.65 A resolution., Wang J, Dauter M, Alkire R, Joachimiak A, Dauter Z, Acta Crystallogr D Biol Crystallogr. 2007 Dec;63(Pt 12):1254-68. Epub 2007, Nov 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18084073 18084073]
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
[[Category: Lysozyme]]
[[Category: Lysozyme]]
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[[Category: triclinic hewl]]
[[Category: triclinic hewl]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:54:44 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:45:01 2008''

Revision as of 16:45, 20 March 2008

Image:2vb1.jpg


PDB ID 2vb1

Drag the structure with the mouse to rotate
, resolution 0.65Å
Sites: , , , , , , , , , , , and
Ligands: , and
Activity: Lysozyme, with EC number 3.2.1.17
Coordinates: save as pdb, mmCIF, xml



HEWL AT 0.65 ANGSTROM RESOLUTION


Overview

The crystal structure of triclinic hen egg-white lysozyme (HEWL) has been refined against diffraction data extending to 0.65 A resolution measured at 100 K using synchrotron radiation. Refinement with anisotropic displacement parameters and with the removal of stereochemical restraints for the well ordered parts of the structure converged with a conventional R factor of 8.39% and an R(free) of 9.52%. The use of full-matrix refinement provided an estimate of the variances in the derived parameters. In addition to the 129-residue protein, a total of 170 water molecules, nine nitrate ions, one acetate ion and three ethylene glycol molecules were located in the electron-density map. Eight sections of the main chain and many side chains were modeled with alternate conformations. The occupancies of the water sites were refined and this step is meaningful when assessed by use of the free R factor. A detailed description and comparison of the structure are made with reference to the previously reported triclinic HEWL structures refined at 0.925 A (at the low temperature of 120 K) and at 0.95 A resolution (at room temperature).

About this Structure

2VB1 is a Single protein structure of sequence from Gallus gallus. Full crystallographic information is available from OCA.

Reference

Triclinic lysozyme at 0.65 A resolution., Wang J, Dauter M, Alkire R, Joachimiak A, Dauter Z, Acta Crystallogr D Biol Crystallogr. 2007 Dec;63(Pt 12):1254-68. Epub 2007, Nov 16. PMID:18084073

Page seeded by OCA on Thu Mar 20 18:45:01 2008

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