4ywq
From Proteopedia
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- | ''' | + | ==Crystal structure of the ROQ domain of human Roquin-1== |
- | + | <StructureSection load='4ywq' size='340' side='right' caption='[[4ywq]], [[Resolution|resolution]] 1.70Å' scene=''> | |
- | + | == Structural highlights == | |
- | + | <table><tr><td colspan='2'>[[4ywq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YWQ FirstGlance]. <br> | |
- | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
- | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ywq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ywq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ywq RCSB], [http://www.ebi.ac.uk/pdbsum/4ywq PDBsum]</span></td></tr> | |
- | [[Category: | + | </table> |
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/RC3H1_HUMAN RC3H1_HUMAN]] Post-transcriptional repressor of mRNAs containing a conserved stem loop motif, called constitutive decay element (CDE), which is often located in the 3'-UTR, as in HMGXB3, ICOS, IER3, NFKBID, NFKBIZ, PPP1R10, TNF and in many more mRNAs (By similarity). Binds to CDE and promotes mRNA deadenylation and degradation. This process does not involve miRNAs (By similarity). In follicular helper T (Tfh) cells, represses of ICOS and TNFRSF4 expression, thus preventing spontaneous Tfh cell differentiation, germinal center B-cell differentiation in the absence of immunization and autoimmunity (By similarity). In resting or LPS-stimulated macrophages, controls inflammation by suppressing TNF expression (By similarity). Also recognizes CDE in its own mRNA and in that of paralogous RC3H2, possibly leading to feedback loop regulation (By similarity). | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Arrowsmith, C H]] | ||
+ | [[Category: Bountra, C]] | ||
[[Category: Dong, A]] | [[Category: Dong, A]] | ||
+ | [[Category: Edwards, A M]] | ||
[[Category: Li, Y]] | [[Category: Li, Y]] | ||
- | [[Category: | + | [[Category: Structural genomic]] |
[[Category: Tempel, W]] | [[Category: Tempel, W]] | ||
- | [[Category: Arrowsmith, C.H]] | ||
[[Category: Tong, Y]] | [[Category: Tong, Y]] | ||
- | [[Category: Edwards, A.M]] | ||
- | [[Category: Structural Genomics Consortium (Sgc)]] | ||
[[Category: Zhang, Q]] | [[Category: Zhang, Q]] | ||
+ | [[Category: E3 ubiquitin ligase]] | ||
+ | [[Category: Rna binding domain]] | ||
+ | [[Category: Rna binding protein]] | ||
+ | [[Category: Roq]] | ||
+ | [[Category: Sgc]] | ||
+ | [[Category: Transcription]] |
Revision as of 12:55, 22 April 2015
Crystal structure of the ROQ domain of human Roquin-1
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Categories: Arrowsmith, C H | Bountra, C | Dong, A | Edwards, A M | Li, Y | Structural genomic | Tempel, W | Tong, Y | Zhang, Q | E3 ubiquitin ligase | Rna binding domain | Rna binding protein | Roq | Sgc | Transcription