Sandbox Reserved 982
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== Structural Highlights == | == Structural Highlights == | ||
Shiga toxin (stx) has multiple classifications. The shiga toxin produced by Shigella dysenteriae is classified as stx, while shiga toxin produced by Escherichia coli can be classified as either stx1 or stx2. All three classifications very slightly in structure but have identical functions. The A subunit of stx1 differs from stx by only one residue: a serine in position 45 as opposed to threonine<ref name="Fraser">Fraser, M. E., Fujinaga, M., Cherney, M. M., Melton-Celsa, A. R., Twiddy, E. M., O’Brien, A. D., & James, M. N. G. (2004). Structure of shiga toxin type 2 (Stx2) from Escherichia coli O157:H7. The Journal of Biological Chemistry, 279(26), 27511–27517. doi:10.1074/jbc.M401939200</ref>. Stx is a 70 kDa AB5 protein, meaning that it is composed of an A subunit bound to a B subunit pentamer. A noncovalent interaction causes the association between the A and B subunits, as the carboxy terminal tail of the A subunit is surrounded by the B pentamer. The A subunit is 293 amino acids long with its active site being glutamic acid 167. Though the active site is a single residue, studies have shown that the first 239 residues are essential for the enzymatic activity of the A subunit. Residues 240-251 are essential for the A subunit’s translocation from the endoplasmic reticulum of an infected cell to the cytosol<ref name="Sandvig">Sandvig, K., & van Deurs, B. (2000). Entry of ricin and Shiga toxin into cells: molecular mechanisms and medical perspectives. The EMBO Journal, 19(22), 5943–5950. doi:10.1093/emboj/19.22.5943</ref>. The A subunit can be broken down into A1 and A2 units. This break down occurs when a trypsin sensitive region, residues 248-251, is cleaved. This cleavage results in the only remaining link being a disulfide bridge between cysteine 241 and cysteine 260. If the disulfide bridge is reduced, the A1 and A2 subunits can completely separate. Interestingly, the disulfide bridge blocks the active site of the A subunit, so the A subunit is not enzymatically active unless it has been cleaved<ref name ="Fraser">Fraser, M. E., Fujinaga, M., Cherney, M. M., Melton-Celsa, A. R., Twiddy, E. M., O’Brien, A. D., & James, M. N. G. (2004). Structure of shiga toxin type 2 (Stx2) from Escherichia coli O157:H7. The Journal of Biological Chemistry, 279(26), 27511–27517. doi:10.1074/jbc.M401939200</ref>. | Shiga toxin (stx) has multiple classifications. The shiga toxin produced by Shigella dysenteriae is classified as stx, while shiga toxin produced by Escherichia coli can be classified as either stx1 or stx2. All three classifications very slightly in structure but have identical functions. The A subunit of stx1 differs from stx by only one residue: a serine in position 45 as opposed to threonine<ref name="Fraser">Fraser, M. E., Fujinaga, M., Cherney, M. M., Melton-Celsa, A. R., Twiddy, E. M., O’Brien, A. D., & James, M. N. G. (2004). Structure of shiga toxin type 2 (Stx2) from Escherichia coli O157:H7. The Journal of Biological Chemistry, 279(26), 27511–27517. doi:10.1074/jbc.M401939200</ref>. Stx is a 70 kDa AB5 protein, meaning that it is composed of an A subunit bound to a B subunit pentamer. A noncovalent interaction causes the association between the A and B subunits, as the carboxy terminal tail of the A subunit is surrounded by the B pentamer. The A subunit is 293 amino acids long with its active site being glutamic acid 167. Though the active site is a single residue, studies have shown that the first 239 residues are essential for the enzymatic activity of the A subunit. Residues 240-251 are essential for the A subunit’s translocation from the endoplasmic reticulum of an infected cell to the cytosol<ref name="Sandvig">Sandvig, K., & van Deurs, B. (2000). Entry of ricin and Shiga toxin into cells: molecular mechanisms and medical perspectives. The EMBO Journal, 19(22), 5943–5950. doi:10.1093/emboj/19.22.5943</ref>. The A subunit can be broken down into A1 and A2 units. This break down occurs when a trypsin sensitive region, residues 248-251, is cleaved. This cleavage results in the only remaining link being a disulfide bridge between cysteine 241 and cysteine 260. If the disulfide bridge is reduced, the A1 and A2 subunits can completely separate. Interestingly, the disulfide bridge blocks the active site of the A subunit, so the A subunit is not enzymatically active unless it has been cleaved<ref name ="Fraser">Fraser, M. E., Fujinaga, M., Cherney, M. M., Melton-Celsa, A. R., Twiddy, E. M., O’Brien, A. D., & James, M. N. G. (2004). Structure of shiga toxin type 2 (Stx2) from Escherichia coli O157:H7. The Journal of Biological Chemistry, 279(26), 27511–27517. doi:10.1074/jbc.M401939200</ref>. | ||
- | <scene name='68/687332/B_subunit/1'>The B subunit</scene> is a symmetrical pentamer that resembles a star and can be divided into five identical subunits. Each of the subunits is 69 amino acids in length. The purpose of the B subunit is to bind to globotriaosylceramide (GB3) which is a glycosphingolipid that is found on the lipid rafts of endothelial cells. Each monomer of the B subunit has three binding sites for GB3, binding to the <scene name='68/687332/Gb3_bound_to_subunit_b/1'> carbohydrate portion of GB3 (1CQF)</scene>. The affinity between the B subunit and GB3 is incredibly low, and is actually one of the lowest recorded affinities for carbohydrate-protein interaction<ref>Jacobson, J. M., Yin, J., Kitov, P. I., Mulvey, G., Griener, T. P., James, M. N. G., … Bundle, D. R. (2014). The crystal structure of Shiga toxin type 2 with bound disaccharide guides the design of a heterobifunctional toxin inhibitor. Journal of Biological Chemistry, 289(2), 885–894. doi:10.1074/jbc.M113.518886</ref>. Some studies have shown that the level of saturation and length of the fatty acid on GB3 affects the strength of its interaction with the B subunit. Since the B subunit of stx has fifteen binding sites though, it has an incredibly high avidity<ref name="Melton">Melton-Celsa, Angela R. “Shiga Toxin (Stx) Classification, Structure, and Function.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0024–2013. PMC. Web</ref>. | + | <scene name='68/687332/B_subunit/1'>The B subunit (2XSC)</scene> is a symmetrical pentamer that resembles a star and can be divided into five identical subunits. Each of the subunits is 69 amino acids in length. The purpose of the B subunit is to bind to globotriaosylceramide (GB3) which is a glycosphingolipid that is found on the lipid rafts of endothelial cells. Each monomer of the B subunit has three binding sites for GB3, binding to the <scene name='68/687332/Gb3_bound_to_subunit_b/1'> carbohydrate portion of GB3 (1CQF)</scene>. The affinity between the B subunit and GB3 is incredibly low, and is actually one of the lowest recorded affinities for carbohydrate-protein interaction<ref>Jacobson, J. M., Yin, J., Kitov, P. I., Mulvey, G., Griener, T. P., James, M. N. G., … Bundle, D. R. (2014). The crystal structure of Shiga toxin type 2 with bound disaccharide guides the design of a heterobifunctional toxin inhibitor. Journal of Biological Chemistry, 289(2), 885–894. doi:10.1074/jbc.M113.518886</ref>. Some studies have shown that the level of saturation and length of the fatty acid on GB3 affects the strength of its interaction with the B subunit. Since the B subunit of stx has fifteen binding sites though, it has an incredibly high avidity<ref name="Melton">Melton-Celsa, Angela R. “Shiga Toxin (Stx) Classification, Structure, and Function.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0024–2013. PMC. Web</ref>. |
== Function == | == Function == | ||
The pathway of stx entering a cell begins with the B subunit’s binding to GB3. Once this occurs, the A subunit disconnects from the B subunit and enters the cell through endocytosis. Using retrograde transport the A subunit passes through the Golgi apparatus and the rough endoplasmic reticulum<ref name="Melton">Melton-Celsa, Angela R. “Shiga Toxin (Stx) Classification, Structure, and Function.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0024–2013. PMC. Web</ref> In the rough endoplasmic reticulum, the A subunit is split into two parts called A1 and A2 through the cleavage of trypsin sensitive residues and the reduction of a disulfide bridge. A2 is degraded, but A1 freely enters the cytosol<ref name="Sandvig">Sandvig, K., & van Deurs, B. (2000). Entry of ricin and Shiga toxin into cells: molecular mechanisms and medical perspectives. The EMBO Journal, 19(22), 5943–5950. doi:10.1093/emboj/19.22.5943</ref>. Once in the cytosol, A1 acts as an N-glycosidase, which is an enzyme that hydrolyzes bonds that link sugars. With this enzymatic activity, A1 removes an adenine from the alpha-sarcin loop in the 28S RNA of the 60S ribosomal subunit<ref name="Melton">Melton-Celsa, Angela R. “Shiga Toxin (Stx) Classification, Structure, and Function.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0024–2013. PMC. Web</ref>. The removal of the adenine prevents elongation factors from associating with the ribosomal subunit. Without elongation factors, the ribosome can no longer synthesize proteins, leading to cell death<ref name="Melton">Melton-Cesla, A. (2012). Shiga toxin classification structure and function. Changes, 29(2), 997–1003</ref>. | The pathway of stx entering a cell begins with the B subunit’s binding to GB3. Once this occurs, the A subunit disconnects from the B subunit and enters the cell through endocytosis. Using retrograde transport the A subunit passes through the Golgi apparatus and the rough endoplasmic reticulum<ref name="Melton">Melton-Celsa, Angela R. “Shiga Toxin (Stx) Classification, Structure, and Function.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0024–2013. PMC. Web</ref> In the rough endoplasmic reticulum, the A subunit is split into two parts called A1 and A2 through the cleavage of trypsin sensitive residues and the reduction of a disulfide bridge. A2 is degraded, but A1 freely enters the cytosol<ref name="Sandvig">Sandvig, K., & van Deurs, B. (2000). Entry of ricin and Shiga toxin into cells: molecular mechanisms and medical perspectives. The EMBO Journal, 19(22), 5943–5950. doi:10.1093/emboj/19.22.5943</ref>. Once in the cytosol, A1 acts as an N-glycosidase, which is an enzyme that hydrolyzes bonds that link sugars. With this enzymatic activity, A1 removes an adenine from the alpha-sarcin loop in the 28S RNA of the 60S ribosomal subunit<ref name="Melton">Melton-Celsa, Angela R. “Shiga Toxin (Stx) Classification, Structure, and Function.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0024–2013. PMC. Web</ref>. The removal of the adenine prevents elongation factors from associating with the ribosomal subunit. Without elongation factors, the ribosome can no longer synthesize proteins, leading to cell death<ref name="Melton">Melton-Cesla, A. (2012). Shiga toxin classification structure and function. Changes, 29(2), 997–1003</ref>. |
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This Sandbox is Reserved from 15-Jan-2015, through 30-May-2015 for use in the course "Biochemistry" taught by Jason Telford at the Maryville University. This reservation includes Sandbox Reserved 977 through Sandbox Reserved 986. |
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Shiga Toxin
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References
- ↑ 1.0 1.1 Fraser, M. E., Fujinaga, M., Cherney, M. M., Melton-Celsa, A. R., Twiddy, E. M., O’Brien, A. D., & James, M. N. G. (2004). Structure of shiga toxin type 2 (Stx2) from Escherichia coli O157:H7. The Journal of Biological Chemistry, 279(26), 27511–27517. doi:10.1074/jbc.M401939200
- ↑ 2.0 2.1 Sandvig, K., & van Deurs, B. (2000). Entry of ricin and Shiga toxin into cells: molecular mechanisms and medical perspectives. The EMBO Journal, 19(22), 5943–5950. doi:10.1093/emboj/19.22.5943
- ↑ Jacobson, J. M., Yin, J., Kitov, P. I., Mulvey, G., Griener, T. P., James, M. N. G., … Bundle, D. R. (2014). The crystal structure of Shiga toxin type 2 with bound disaccharide guides the design of a heterobifunctional toxin inhibitor. Journal of Biological Chemistry, 289(2), 885–894. doi:10.1074/jbc.M113.518886
- ↑ 4.0 4.1 4.2 4.3 Melton-Celsa, Angela R. “Shiga Toxin (Stx) Classification, Structure, and Function.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0024–2013. PMC. Web
- ↑ Zaidi, Mussaret Bano, and Teresa Estrada-García. "Shigella: A Highly Virulent and Elusive pathogen." Current Tropical Medicine Reports 1.2 (2014): 81-87
- ↑ Kaper, James B. and Alison D. O’Brien. “Overview and Historical Perspectives.” Microbiology spectrum 2.2 (2014): 10.1128/microbiolspec.EHEC–0028–2014. PMC. Web
- ↑ Krüger, Alejandra, and Paula María Alejandra Lucchesi. "Shiga toxins and stx-phages: highly diverse entities." Microbiology (2014): mic-0