User:Dzmitry Mukha/sandbox1

hnRNP A1 is a member of A/B subfamily of heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). hnRNP A1 is involved in the packaging of premature mRNA into hnRNP particles and transport of poly(A) mRNA from the nucleus to the cytoplasm. hnRNP A1 has been characterized as a component of protein complexes bound to premature mRNA (hnRNP complexes). hnRNP A1 is one of the most abundant and best-characterized components of hnRNP complexes. Human hnRNP functions also in telomere length regulation and miRNA biogenesis. It may play a role in the replication of RNA viruses.

Human hnRNP A1 consists of 320 amino acids. N-terminal region is composed of 2 RNA recognition motifs (RRM) followed by highly flexible C-terminal glycine-rich region (45 % of glycine). RRM1 and RRM2 (span residues 1 to 196) together form unwinding protein 1 (UP1).

The secondary structure of the RRM is characterized by a βαβαββαβ-fold in which the four b-strands make a relatively flat, anti-parallel β-sheet that forms most of the nucleic acid binding surface.

To date, several crystal structures of UP1 have been solved both in their free form and bound to repeats of telomeric DNA fragments. NMR structure of hnRNP A1 RRM domains was determined using a segmental labeling strategy ^[1].

Interaction between RRM domains

Two RRMs are interaction with one another via two Arg-Asp salt bridges. The interactions between domains of UP1 is quite week, since the orientation of the two RRMs can be influenced by nucleic acid binding or by contacts with neighboring molecules in the crystal lattice.

In the solution structure of free UP1, the two Arg-Asp salt bridges are conserved at the interface between RRM1 and RRM2.

Structural highlights

This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

Myers, J.C., Moore, S.A., Shamoo, Y. Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures. (2003) J.BIOL.CHEM. 278: 42300-42306

Myers, J.C., Shamoo, Y. Human UP1 as a model for understanding purine recognition in the family of proteins containing the RNA recognition motif (RRM). (2004) J.Mol.Biol. 342: 743-756

Barraud, P., Allain, F.H. Solution structure of the two RNA recognition motifs of hnRNP A1 using segmental isotope labeling: how the relative orientation between RRMs influences the nucleic acid binding topology. (2013) J.Biomol.Nmr 55: 119-138