4pde

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
+
==Crystal structure of FdhD in complex with GDP==
 +
<StructureSection load='4pde' size='340' side='right' caption='[[4pde]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4pde]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PDE FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pde OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4pde RCSB], [http://www.ebi.ac.uk/pdbsum/4pde PDBsum]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/J7QY30_ECOLX J7QY30_ECOLX]] Necessary for formate dehydrogenase activity.[HAMAP-Rule:MF_00187][SAAS:SAAS00093836]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Formate dehydrogenases (FDHs) are of interest as they are natural catalysts that sequester atmospheric CO2, generating reduced carbon compounds with possible uses as fuel. FDHs activity in Escherichia coli strictly requires the sulphurtransferase EcFdhD, which likely transfers sulphur from IscS to the molybdenum cofactor (Mo-bisPGD) of FDHs. Here we show that EcFdhD binds Mo-bisPGD in vivo and has submicromolar affinity for GDP-used as a surrogate of the molybdenum cofactor's nucleotide moieties. The crystal structure of EcFdhD in complex with GDP shows two symmetrical binding sites located on the same face of the dimer. These binding sites are connected via a tunnel-like cavity to the opposite face of the dimer where two dynamic loops, each harbouring two functionally important cysteine residues, are present. On the basis of structure-guided mutagenesis, we propose a model for the sulphuration mechanism of Mo-bisPGD where the sulphur atom shuttles across the chaperone dimer.
-
The entry 4pde is ON HOLD
+
Sulphur shuttling across a chaperone during molybdenum cofactor maturation.,Arnoux P, Ruppelt C, Oudouhou F, Lavergne J, Siponen MI, Toci R, Mendel RR, Bittner F, Pignol D, Magalon A, Walburger A Nat Commun. 2015 Feb 4;6:6148. doi: 10.1038/ncomms7148. PMID:25649206<ref>PMID:25649206</ref>
-
Authors: Arnoux, P., Walburger, A., Magalon, A., Pignol, D.
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
Description: Crystal structure of FdhD in complex with GDP
+
== References ==
-
[[Category: Unreleased Structures]]
+
<references/>
-
[[Category: Walburger, A]]
+
__TOC__
 +
</StructureSection>
[[Category: Arnoux, P]]
[[Category: Arnoux, P]]
[[Category: Magalon, A]]
[[Category: Magalon, A]]
[[Category: Pignol, D]]
[[Category: Pignol, D]]
 +
[[Category: Walburger, A]]
 +
[[Category: Gdp]]
 +
[[Category: Hydrolase]]
 +
[[Category: Mo-bispgd sulfuration]]

Revision as of 12:07, 20 May 2015

Crystal structure of FdhD in complex with GDP

4pde, resolution 2.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools