5a3u
From Proteopedia
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| - | ''' | + | ==HIF prolyl hydroxylase 2 (PHD2/EGLN1) in complex with 6-(5-oxo-4-(1H- 1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid== |
| + | <StructureSection load='5a3u' size='340' side='right' caption='[[5a3u]], [[Resolution|resolution]] 3.30Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5a3u]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A3U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5A3U FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=R8J:6-(5-OXO-4-(1H-1,2,3-TRIAZOL-1-YL)-2,5-DIHYDRO-1H-PYRAZOL-1-YL)NICOTINIC+ACID'>R8J</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4bqw|4bqw]], [[4bqx|4bqx]], [[4bqy|4bqy]], [[2g19|2g19]], [[2g1m|2g1m]]</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a3u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5a3u RCSB], [http://www.ebi.ac.uk/pdbsum/5a3u PDBsum]</span></td></tr> | ||
| + | </table> | ||
| + | == Disease == | ||
| + | [[http://www.uniprot.org/uniprot/EGLN1_HUMAN EGLN1_HUMAN]] Defects in EGLN1 are the cause of familial erythrocytosis type 3 (ECYT3) [MIM:[http://omim.org/entry/609820 609820]]. ECYT3 is an autosomal dominant disorder characterized by increased serum red blood cell mass, elevated serum hemoglobin and hematocrit, and normal serum erythropoietin levels.<ref>PMID:16407130</ref> <ref>PMID:17579185</ref> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/EGLN1_HUMAN EGLN1_HUMAN]] Cellular oxygen sensor that catalyzes, under normoxic conditions, the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins. Hydroxylates a specific proline found in each of the oxygen-dependent degradation (ODD) domains (N-terminal, NODD, and C-terminal, CODD) of HIF1A. Also hydroxylates HIF2A. Has a preference for the CODD site for both HIF1A and HIF1B. Hydroxylated HIFs are then targeted for proteasomal degradation via the von Hippel-Lindau ubiquitination complex. Under hypoxic conditions, the hydroxylation reaction is attenuated allowing HIFs to escape degradation resulting in their translocation to the nucleus, heterodimerization with HIF1B, and increased expression of hypoxy-inducible genes. EGLN1 is the most important isozyme under normoxia and, through regulating the stability of HIF1, involved in various hypoxia-influenced processes such as angiogenesis in retinal and cardiac functionality.<ref>PMID:11595184</ref> <ref>PMID:12351678</ref> <ref>PMID:15897452</ref> <ref>PMID:19339211</ref> <ref>PMID:21792862</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The hypoxia inducible factor (HIF) system is central to the signaling of low oxygen (hypoxia) in animals. The levels of HIF-alpha isoforms are regulated in an oxygen-dependent manner by the activity of the HIF prolyl-hydroxylases (PHD or EGLN enzymes), which are Fe(II) and 2-oxoglutarate (2OG) dependent oxygenases. Here, we describe biochemical, crystallographic and cellular profiling studies on PHD inhibitors including selectivity studies using a representative set of human 2OG oxygenases. We identify suitable probe compounds for use in studies on the functional effects of PHD inhibition in cells and in animals. | ||
| - | + | Selective Small Molecule Probes for the Hypoxia Inducible Factor (HIF) Prolyl Hydroxylases.,Chowdhury R, Candela-Lena JI, Chan MC, Greenald DJ, Yeoh KK, Tian YM, McDonough MA, Tumber A, Rose NR, Conejo-Garcia A, Demetriades M, Mathavan S, Kawamura A, Lee MK, van Eeden F, Pugh CW, Ratcliffe PJ, Schofield CJ ACS Chem Biol. 2013 May 17. PMID:23683440<ref>PMID:23683440</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | == References == | |
| - | + | <references/> | |
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Chowdhury, R]] | [[Category: Chowdhury, R]] | ||
| - | [[Category: Schofield, C.J]] | ||
[[Category: Gomez-Perez, V]] | [[Category: Gomez-Perez, V]] | ||
| + | [[Category: Schofield, C J]] | ||
| + | [[Category: 2-oxoglutarate]] | ||
| + | [[Category: Ankyrin repeat domain]] | ||
| + | [[Category: Ard]] | ||
| + | [[Category: Asparaginyl/ aspartyl hydroxylase]] | ||
| + | [[Category: Beta-hydroxylation]] | ||
| + | [[Category: Cell structure]] | ||
| + | [[Category: Development]] | ||
| + | [[Category: Dioxygenase]] | ||
| + | [[Category: Dna-binding]] | ||
| + | [[Category: Dsbh]] | ||
| + | [[Category: Egln]] | ||
| + | [[Category: Facial triad]] | ||
| + | [[Category: Helix-loop-helix-beta]] | ||
| + | [[Category: Hif]] | ||
| + | [[Category: Hif prolyl hydroxylase domain 2]] | ||
| + | [[Category: Hypoxia]] | ||
| + | [[Category: Hypoxia-inducible factor]] | ||
| + | [[Category: Iron]] | ||
| + | [[Category: Metal-binding]] | ||
| + | [[Category: Non-heme]] | ||
| + | [[Category: Oxidoreductase]] | ||
| + | [[Category: Oxygenase]] | ||
| + | [[Category: Phd2]] | ||
| + | [[Category: Phosphorylation]] | ||
| + | [[Category: S-nitrosylation]] | ||
| + | [[Category: Signaling]] | ||
| + | [[Category: Transcription]] | ||
| + | [[Category: Transcription activator/inhibitor]] | ||
| + | [[Category: Transcription and epigenetic regulation]] | ||
Revision as of 15:01, 17 June 2015
HIF prolyl hydroxylase 2 (PHD2/EGLN1) in complex with 6-(5-oxo-4-(1H- 1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid
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Categories: Chowdhury, R | Gomez-Perez, V | Schofield, C J | 2-oxoglutarate | Ankyrin repeat domain | Ard | Asparaginyl/ aspartyl hydroxylase | Beta-hydroxylation | Cell structure | Development | Dioxygenase | Dna-binding | Dsbh | Egln | Facial triad | Helix-loop-helix-beta | Hif | Hif prolyl hydroxylase domain 2 | Hypoxia | Hypoxia-inducible factor | Iron | Metal-binding | Non-heme | Oxidoreductase | Oxygenase | Phd2 | Phosphorylation | S-nitrosylation | Signaling | Transcription | Transcription activator/inhibitor | Transcription and epigenetic regulation
