This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c5y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="3c5y" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c5y, resolution 1.810&Aring;" /> '''Crystal structure o...)
Line 1: Line 1:
-
[[Image:3c5y.jpg|left|200px]]<br /><applet load="3c5y" size="350" color="white" frame="true" align="right" spinBox="true"
+
[[Image:3c5y.jpg|left|200px]]
-
caption="3c5y, resolution 1.810&Aring;" />
+
 
-
'''Crystal structure of putative ribose 5-phosphate isomerase (YP_001165900.1) from Novosphingobium aromaticivorans DSM 12444 at 1.81 A resolution'''<br />
+
{{Structure
 +
|PDB= 3c5y |SIZE=350|CAPTION= <scene name='initialview01'>3c5y</scene>, resolution 1.810&Aring;
 +
|SITE= <scene name='pdbsite=AC1:No3+Binding+Site+For+Residue+F+213'>AC1</scene>, <scene name='pdbsite=AC2:No3+Binding+Site+For+Residue+F+214'>AC2</scene>, <scene name='pdbsite=AC3:No3+Binding+Site+For+Residue+I+213'>AC3</scene>, <scene name='pdbsite=AC4:No3+Binding+Site+For+Residue+G+213'>AC4</scene>, <scene name='pdbsite=AC5:No3+Binding+Site+For+Residue+G+214'>AC5</scene>, <scene name='pdbsite=AC6:No3+Binding+Site+For+Residue+F+215'>AC6</scene>, <scene name='pdbsite=AC7:No3+Binding+Site+For+Residue+F+216'>AC7</scene>, <scene name='pdbsite=AC8:No3+Binding+Site+For+Residue+P+213'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+H+213'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+B+213'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+K+213'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+G+215'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+E+213'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+I+214'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+L+213'>BC6</scene>, <scene name='pdbsite=BC7:Edo+Binding+Site+For+Residue+J+213'>BC7</scene>, <scene name='pdbsite=BC8:Edo+Binding+Site+For+Residue+N+213'>BC8</scene>, <scene name='pdbsite=BC9:Edo+Binding+Site+For+Residue+A+213'>BC9</scene>, <scene name='pdbsite=CC1:Edo+Binding+Site+For+Residue+E+214'>CC1</scene>, <scene name='pdbsite=CC2:Edo+Binding+Site+For+Residue+G+216'>CC2</scene>, <scene name='pdbsite=CC3:Edo+Binding+Site+For+Residue+F+217'>CC3</scene>, <scene name='pdbsite=CC4:Edo+Binding+Site+For+Residue+F+218'>CC4</scene>, <scene name='pdbsite=CC5:Edo+Binding+Site+For+Residue+C+213'>CC5</scene>, <scene name='pdbsite=CC6:Edo+Binding+Site+For+Residue+M+213'>CC6</scene>, <scene name='pdbsite=CC7:Edo+Binding+Site+For+Residue+D+213'>CC7</scene>, <scene name='pdbsite=CC8:Edo+Binding+Site+For+Residue+B+214'>CC8</scene>, <scene name='pdbsite=CC9:Edo+Binding+Site+For+Residue+B+215'>CC9</scene>, <scene name='pdbsite=DC1:Edo+Binding+Site+For+Residue+A+214'>DC1</scene>, <scene name='pdbsite=DC2:Edo+Binding+Site+For+Residue+B+216'>DC2</scene>, <scene name='pdbsite=DC3:Edo+Binding+Site+For+Residue+B+217'>DC3</scene>, <scene name='pdbsite=DC4:Edo+Binding+Site+For+Residue+P+214'>DC4</scene>, <scene name='pdbsite=DC5:Edo+Binding+Site+For+Residue+E+215'>DC5</scene>, <scene name='pdbsite=DC6:Edo+Binding+Site+For+Residue+I+215'>DC6</scene>, <scene name='pdbsite=DC7:Edo+Binding+Site+For+Residue+J+214'>DC7</scene>, <scene name='pdbsite=DC8:Edo+Binding+Site+For+Residue+A+215'>DC8</scene>, <scene name='pdbsite=DC9:Edo+Binding+Site+For+Residue+G+217'>DC9</scene>, <scene name='pdbsite=EC1:Edo+Binding+Site+For+Residue+H+214'>EC1</scene>, <scene name='pdbsite=EC2:Edo+Binding+Site+For+Residue+H+215'>EC2</scene>, <scene name='pdbsite=EC3:Edo+Binding+Site+For+Residue+K+214'>EC3</scene>, <scene name='pdbsite=EC4:Edo+Binding+Site+For+Residue+G+218'>EC4</scene>, <scene name='pdbsite=EC5:Edo+Binding+Site+For+Residue+G+219'>EC5</scene>, <scene name='pdbsite=EC6:Edo+Binding+Site+For+Residue+H+216'>EC6</scene>, <scene name='pdbsite=EC7:Edo+Binding+Site+For+Residue+A+216'>EC7</scene>, <scene name='pdbsite=EC8:Edo+Binding+Site+For+Residue+D+214'>EC8</scene>, <scene name='pdbsite=EC9:Edo+Binding+Site+For+Residue+K+215'>EC9</scene>, <scene name='pdbsite=FC1:Edo+Binding+Site+For+Residue+H+217'>FC1</scene>, <scene name='pdbsite=FC2:Edo+Binding+Site+For+Residue+M+214'>FC2</scene>, <scene name='pdbsite=FC3:Edo+Binding+Site+For+Residue+I+216'>FC3</scene>, <scene name='pdbsite=FC4:Edo+Binding+Site+For+Residue+A+217'>FC4</scene>, <scene name='pdbsite=FC5:Edo+Binding+Site+For+Residue+M+215'>FC5</scene>, <scene name='pdbsite=FC6:Edo+Binding+Site+For+Residue+I+217'>FC6</scene>, <scene name='pdbsite=FC7:Edo+Binding+Site+For+Residue+A+218'>FC7</scene>, <scene name='pdbsite=FC8:Edo+Binding+Site+For+Residue+G+220'>FC8</scene>, <scene name='pdbsite=FC9:Edo+Binding+Site+For+Residue+F+219'>FC9</scene>, <scene name='pdbsite=GC1:Edo+Binding+Site+For+Residue+N+214'>GC1</scene>, <scene name='pdbsite=GC2:Edo+Binding+Site+For+Residue+J+215'>GC2</scene>, <scene name='pdbsite=GC3:Edo+Binding+Site+For+Residue+F+220'>GC3</scene>, <scene name='pdbsite=GC4:Edo+Binding+Site+For+Residue+E+216'>GC4</scene>, <scene name='pdbsite=GC5:Edo+Binding+Site+For+Residue+H+218'>GC5</scene>, <scene name='pdbsite=GC6:Edo+Binding+Site+For+Residue+A+219'>GC6</scene>, <scene name='pdbsite=GC7:Edo+Binding+Site+For+Residue+M+216'>GC7</scene>, <scene name='pdbsite=GC8:Edo+Binding+Site+For+Residue+A+220'>GC8</scene>, <scene name='pdbsite=GC9:Edo+Binding+Site+For+Residue+F+221'>GC9</scene>, <scene name='pdbsite=HC1:Edo+Binding+Site+For+Residue+C+214'>HC1</scene>, <scene name='pdbsite=HC2:Edo+Binding+Site+For+Residue+F+222'>HC2</scene>, <scene name='pdbsite=HC3:Edo+Binding+Site+For+Residue+N+215'>HC3</scene>, <scene name='pdbsite=HC4:Edo+Binding+Site+For+Residue+E+217'>HC4</scene>, <scene name='pdbsite=HC5:Edo+Binding+Site+For+Residue+G+221'>HC5</scene> and <scene name='pdbsite=HC6:Edo+Binding+Site+For+Residue+B+218'>HC6</scene>
 +
|LIGAND= <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene> and <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
 +
|ACTIVITY=
 +
|GENE= YP_001165900.1, Saro_3514 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=279238 Novosphingobium aromaticivorans DSM 12444])
 +
}}
 +
 
 +
'''Crystal structure of putative ribose 5-phosphate isomerase (YP_001165900.1) from Novosphingobium aromaticivorans DSM 12444 at 1.81 A resolution'''
 +
 
==About this Structure==
==About this Structure==
-
3C5Y is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_dsm_12444 Novosphingobium aromaticivorans dsm 12444] with <scene name='pdbligand=NO3:'>NO3</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:No3+Binding+Site+For+Residue+F+213'>AC1</scene>, <scene name='pdbsite=AC2:No3+Binding+Site+For+Residue+F+214'>AC2</scene>, <scene name='pdbsite=AC3:No3+Binding+Site+For+Residue+I+213'>AC3</scene>, <scene name='pdbsite=AC4:No3+Binding+Site+For+Residue+G+213'>AC4</scene>, <scene name='pdbsite=AC5:No3+Binding+Site+For+Residue+G+214'>AC5</scene>, <scene name='pdbsite=AC6:No3+Binding+Site+For+Residue+F+215'>AC6</scene>, <scene name='pdbsite=AC7:No3+Binding+Site+For+Residue+F+216'>AC7</scene>, <scene name='pdbsite=AC8:No3+Binding+Site+For+Residue+P+213'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+H+213'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+B+213'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+K+213'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+G+215'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+E+213'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+I+214'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+L+213'>BC6</scene>, <scene name='pdbsite=BC7:Edo+Binding+Site+For+Residue+J+213'>BC7</scene>, <scene name='pdbsite=BC8:Edo+Binding+Site+For+Residue+N+213'>BC8</scene>, <scene name='pdbsite=BC9:Edo+Binding+Site+For+Residue+A+213'>BC9</scene>, <scene name='pdbsite=CC1:Edo+Binding+Site+For+Residue+E+214'>CC1</scene>, <scene name='pdbsite=CC2:Edo+Binding+Site+For+Residue+G+216'>CC2</scene>, <scene name='pdbsite=CC3:Edo+Binding+Site+For+Residue+F+217'>CC3</scene>, <scene name='pdbsite=CC4:Edo+Binding+Site+For+Residue+F+218'>CC4</scene>, <scene name='pdbsite=CC5:Edo+Binding+Site+For+Residue+C+213'>CC5</scene>, <scene name='pdbsite=CC6:Edo+Binding+Site+For+Residue+M+213'>CC6</scene>, <scene name='pdbsite=CC7:Edo+Binding+Site+For+Residue+D+213'>CC7</scene>, <scene name='pdbsite=CC8:Edo+Binding+Site+For+Residue+B+214'>CC8</scene>, <scene name='pdbsite=CC9:Edo+Binding+Site+For+Residue+B+215'>CC9</scene>, <scene name='pdbsite=DC1:Edo+Binding+Site+For+Residue+A+214'>DC1</scene>, <scene name='pdbsite=DC2:Edo+Binding+Site+For+Residue+B+216'>DC2</scene>, <scene name='pdbsite=DC3:Edo+Binding+Site+For+Residue+B+217'>DC3</scene>, <scene name='pdbsite=DC4:Edo+Binding+Site+For+Residue+P+214'>DC4</scene>, <scene name='pdbsite=DC5:Edo+Binding+Site+For+Residue+E+215'>DC5</scene>, <scene name='pdbsite=DC6:Edo+Binding+Site+For+Residue+I+215'>DC6</scene>, <scene name='pdbsite=DC7:Edo+Binding+Site+For+Residue+J+214'>DC7</scene>, <scene name='pdbsite=DC8:Edo+Binding+Site+For+Residue+A+215'>DC8</scene>, <scene name='pdbsite=DC9:Edo+Binding+Site+For+Residue+G+217'>DC9</scene>, <scene name='pdbsite=EC1:Edo+Binding+Site+For+Residue+H+214'>EC1</scene>, <scene name='pdbsite=EC2:Edo+Binding+Site+For+Residue+H+215'>EC2</scene>, <scene name='pdbsite=EC3:Edo+Binding+Site+For+Residue+K+214'>EC3</scene>, <scene name='pdbsite=EC4:Edo+Binding+Site+For+Residue+G+218'>EC4</scene>, <scene name='pdbsite=EC5:Edo+Binding+Site+For+Residue+G+219'>EC5</scene>, <scene name='pdbsite=EC6:Edo+Binding+Site+For+Residue+H+216'>EC6</scene>, <scene name='pdbsite=EC7:Edo+Binding+Site+For+Residue+A+216'>EC7</scene>, <scene name='pdbsite=EC8:Edo+Binding+Site+For+Residue+D+214'>EC8</scene>, <scene name='pdbsite=EC9:Edo+Binding+Site+For+Residue+K+215'>EC9</scene>, <scene name='pdbsite=FC1:Edo+Binding+Site+For+Residue+H+217'>FC1</scene>, <scene name='pdbsite=FC2:Edo+Binding+Site+For+Residue+M+214'>FC2</scene>, <scene name='pdbsite=FC3:Edo+Binding+Site+For+Residue+I+216'>FC3</scene>, <scene name='pdbsite=FC4:Edo+Binding+Site+For+Residue+A+217'>FC4</scene>, <scene name='pdbsite=FC5:Edo+Binding+Site+For+Residue+M+215'>FC5</scene>, <scene name='pdbsite=FC6:Edo+Binding+Site+For+Residue+I+217'>FC6</scene>, <scene name='pdbsite=FC7:Edo+Binding+Site+For+Residue+A+218'>FC7</scene>, <scene name='pdbsite=FC8:Edo+Binding+Site+For+Residue+G+220'>FC8</scene>, <scene name='pdbsite=FC9:Edo+Binding+Site+For+Residue+F+219'>FC9</scene>, <scene name='pdbsite=GC1:Edo+Binding+Site+For+Residue+N+214'>GC1</scene>, <scene name='pdbsite=GC2:Edo+Binding+Site+For+Residue+J+215'>GC2</scene>, <scene name='pdbsite=GC3:Edo+Binding+Site+For+Residue+F+220'>GC3</scene>, <scene name='pdbsite=GC4:Edo+Binding+Site+For+Residue+E+216'>GC4</scene>, <scene name='pdbsite=GC5:Edo+Binding+Site+For+Residue+H+218'>GC5</scene>, <scene name='pdbsite=GC6:Edo+Binding+Site+For+Residue+A+219'>GC6</scene>, <scene name='pdbsite=GC7:Edo+Binding+Site+For+Residue+M+216'>GC7</scene>, <scene name='pdbsite=GC8:Edo+Binding+Site+For+Residue+A+220'>GC8</scene>, <scene name='pdbsite=GC9:Edo+Binding+Site+For+Residue+F+221'>GC9</scene>, <scene name='pdbsite=HC1:Edo+Binding+Site+For+Residue+C+214'>HC1</scene>, <scene name='pdbsite=HC2:Edo+Binding+Site+For+Residue+F+222'>HC2</scene>, <scene name='pdbsite=HC3:Edo+Binding+Site+For+Residue+N+215'>HC3</scene>, <scene name='pdbsite=HC4:Edo+Binding+Site+For+Residue+E+217'>HC4</scene>, <scene name='pdbsite=HC5:Edo+Binding+Site+For+Residue+G+221'>HC5</scene> and <scene name='pdbsite=HC6:Edo+Binding+Site+For+Residue+B+218'>HC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5Y OCA].
+
3C5Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_dsm_12444 Novosphingobium aromaticivorans dsm 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C5Y OCA].
[[Category: Novosphingobium aromaticivorans dsm 12444]]
[[Category: Novosphingobium aromaticivorans dsm 12444]]
[[Category: Single protein]]
[[Category: Single protein]]
Line 11: Line 20:
[[Category: NO3]]
[[Category: NO3]]
[[Category: jcsg]]
[[Category: jcsg]]
-
[[Category: joint center for structural genomics]]
+
[[Category: joint center for structural genomic]]
[[Category: plasmid]]
[[Category: plasmid]]
[[Category: protein structure initiative]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: psi-2]]
[[Category: putative ribose 5-phosphate isomerase]]
[[Category: putative ribose 5-phosphate isomerase]]
-
[[Category: structural genomics]]
+
[[Category: structural genomic]]
[[Category: unknown function]]
[[Category: unknown function]]
[[Category: yp_001165900 1]]
[[Category: yp_001165900 1]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:28 2008''
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:02:45 2008''

Revision as of 17:02, 20 March 2008

Image:3c5y.jpg


PDB ID 3c5y

Drag the structure with the mouse to rotate
, resolution 1.810Å
Sites: , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , and
Ligands: and
Gene: YP_001165900.1, Saro_3514 (Novosphingobium aromaticivorans DSM 12444)
Coordinates: save as pdb, mmCIF, xml



Crystal structure of putative ribose 5-phosphate isomerase (YP_001165900.1) from Novosphingobium aromaticivorans DSM 12444 at 1.81 A resolution


About this Structure

3C5Y is a Single protein structure of sequence from Novosphingobium aromaticivorans dsm 12444. Full crystallographic information is available from OCA.

Page seeded by OCA on Thu Mar 20 19:02:45 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3c5y"
Personal tools