2i6e

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|PDB= 2i6e |SIZE=350|CAPTION= <scene name='initialview01'>2i6e</scene>, resolution 2.50&Aring;
|PDB= 2i6e |SIZE=350|CAPTION= <scene name='initialview01'>2i6e</scene>, resolution 2.50&Aring;
|SITE=
|SITE=
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|LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene>
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|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
|ACTIVITY=
|ACTIVITY=
|GENE= DR_0370 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1299 Deinococcus radiodurans])
|GENE= DR_0370 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1299 Deinococcus radiodurans])
 +
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1427 COG1427]</span>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i6e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i6e OCA], [http://www.ebi.ac.uk/pdbsum/2i6e PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2i6e RCSB]</span>
}}
}}
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[[Category: Swaminathan, S.]]
[[Category: Swaminathan, S.]]
[[Category: Tyagi, R.]]
[[Category: Tyagi, R.]]
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[[Category: SO4]]
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[[Category: hypothetical protein,pfam:duf178]]
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[[Category: 10093b]]
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[[Category: hypothetical protein]]
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[[Category: new york structural genomix research consortium]]
[[Category: new york structural genomix research consortium]]
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[[Category: nysgxrc]]
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[[Category: nysgxrc,10093b]]
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[[Category: pfam:duf178]]
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[[Category: protein structure initiative]]
[[Category: protein structure initiative]]
[[Category: psi-2]]
[[Category: psi-2]]
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[[Category: unknown function]]
[[Category: unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:25:58 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:31:01 2008''

Revision as of 04:31, 26 March 2008

Image:2i6e.gif


PDB ID 2i6e

Drag the structure with the mouse to rotate
, resolution 2.50Å
Ligands: ,
Gene: DR_0370 (Deinococcus radiodurans)
Domains: COG1427
Resources: FirstGlance, OCA, PDBsum, JenaLib, RCSB
Coordinates: save as pdb, mmCIF, xml



Crystal structure of protein DR0370 from Deinococcus radiodurans, Pfam DUF178


Overview

BACKGROUND: Pfam is a comprehensive collection of protein domains and families, with a range of well-established information including genome annotation. Pfam has two large series of functionally uncharacterized families, known as Domains of Unknown Function (DUFs) and Uncharacterized Protein Families (UPFs). RESULTS: Crystal structures of two proteins from Deinococcus radiodurans and Streptomyces coelicolor belonging to Pfam protein family DUF178 (ID: PF02621) have been determined using Selenium-Single-wavelength Anomalous Dispersion (Se-SAD). Based on the structure, we have identified the putative function for this family of protein. CONCLUSION: Unexpectedly, we found that DUF178 Pfam is remarkably similar to Pfam family DUF191 suggesting that the sequence-based classification alone may not be sufficient to classify proteins into Pfam families.

About this Structure

2I6E is a Single protein structure of sequence from Deinococcus radiodurans. Full crystallographic information is available from OCA.

Reference

X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family., Tyagi R, Burley SK, Swaminathan S, BMC Struct Biol. 2007 Oct 1;7:62. PMID:17908300

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