Timothy Locksmith sandbox Heat Sock Factor
From Proteopedia
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| == Sturcture/DNA Interaction == | == Sturcture/DNA Interaction == | ||
| - | HSF remains as a monomer when bound with Hsp under non-stressed conditions. Under stressed conditions (increased temperature) three individual monomers of HSF move into the cell’s nucleus, trimerize <scene name='71/714949/Dimer_hsf_with_dna_interaction/ | + | HSF remains as a monomer when bound with Hsp under non-stressed conditions. Under stressed conditions (increased temperature) three individual monomers of HSF move into the cell’s nucleus, trimerize ( <scene name='71/714949/Dimer_hsf_with_dna_interaction/3'>HSF_Dimer</scene> could not find representation of trimer), and then bind to the large Groove of the DNA to Heat shock elements throughout the genome. Specifically an Arginine, and Methionine from each of the monomer bind to three oppositely oriented "AGAAN" sections of the genome.2 These residues interact with the nucleotide bases, while nearby residues inerac6t with the back bone to stabilize the transcription factor in place <scene name='71/714949/Arg_met_interact/1'>(Arg/Met location)</scene>. | 
Revision as of 04:50, 13 October 2015
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Littlefield O, Nelson HC. A new use for the 'wing' of the 'winged' helix-turn-helix motif in the HSF-DNA cocrystal. Nat Struct Biol. 1999 May;6(5):464-70. PMID:10331875 doi:10.1038/8269

