148l
From Proteopedia
| Line 4: | Line 4: | ||
|PDB= 148l |SIZE=350|CAPTION= <scene name='initialview01'>148l</scene>, resolution 1.90Å | |PDB= 148l |SIZE=350|CAPTION= <scene name='initialview01'>148l</scene>, resolution 1.90Å | ||
|SITE= | |SITE= | ||
| - | |LIGAND= <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene> | + | |LIGAND= <scene name='pdbligand=AMU:BETA-N-ACETYLMURAMIC+ACID'>AMU</scene>, <scene name='pdbligand=API:2,6-DIAMINOPIMELIC+ACID'>API</scene>, <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] | + | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span> |
|GENE= | |GENE= | ||
| + | |DOMAIN= | ||
| + | |RELATEDENTRY= | ||
| + | |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=148l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=148l OCA], [http://www.ebi.ac.uk/pdbsum/148l PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=148l RCSB]</span> | ||
}} | }} | ||
| Line 16: | Line 19: | ||
==About this Structure== | ==About this Structure== | ||
| - | 148L is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ | + | 148L is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. The following page contains interesting information on the relation of 148L with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb9_1.html Lysozyme]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=148L OCA]. |
==Reference== | ==Reference== | ||
A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme., Kuroki R, Weaver LH, Matthews BW, Science. 1993 Dec 24;262(5142):2030-3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8266098 8266098] | A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme., Kuroki R, Weaver LH, Matthews BW, Science. 1993 Dec 24;262(5142):2030-3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8266098 8266098] | ||
| - | [[Category: Enterobacteria phage | + | [[Category: Enterobacteria phage t4]] |
[[Category: Lysozyme]] | [[Category: Lysozyme]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| Line 26: | Line 29: | ||
[[Category: Matthews, B W.]] | [[Category: Matthews, B W.]] | ||
[[Category: Weaver, L H.]] | [[Category: Weaver, L H.]] | ||
| - | [[Category: BME]] | ||
[[Category: hydrolase(o-glycosyl)]] | [[Category: hydrolase(o-glycosyl)]] | ||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:28:13 2008'' |
Revision as of 15:28, 30 March 2008
| |||||||
| , resolution 1.90Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , | ||||||
| Activity: | Lysozyme, with EC number 3.2.1.17 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
A COVALENT ENZYME-SUBSTRATE INTERMEDIATE WITH SACCHARIDE DISTORTION IN A MUTANT T4 LYSOZYME
Overview
The glycosyl-enzyme intermediate in lysozyme action has long been considered to be an oxocarbonium ion, although precedent from other glycosidases and theoretical considerations suggest it should be a covalent enzyme-substrate adduct. The mutation of threonine 26 to glutamic acid in the active site cleft of phage T4 lysozyme (T4L) produced an enzyme that cleaved the cell wall of Escherichia coli but left the product covalently bound to the enzyme. The crystalline complex was nonisomorphous with wild-type T4L, and analysis of its structure showed a covalent linkage between the product and the newly introduced glutamic acid 26. The covalently linked sugar ring was substantially distorted, suggesting that distortion of the substrate toward the transition state is important for catalysis, as originally proposed by Phillips. It is also postulated that the adduct formed by the mutant is an intermediate, consistent with a double displacement mechanism of action in which the glycosidic linkage is cleaved with retention of configuration as originally proposed by Koshland. The peptide part of the cell wall fragment displays extensive hydrogen-bonding interactions with the carboxyl-terminal domain of the enzyme, consistent with previous studies of mutations in T4L.
About this Structure
148L is a Single protein structure of sequence from Enterobacteria phage t4. The following page contains interesting information on the relation of 148L with [Lysozyme]. Full crystallographic information is available from OCA.
Reference
A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme., Kuroki R, Weaver LH, Matthews BW, Science. 1993 Dec 24;262(5142):2030-3. PMID:8266098
Page seeded by OCA on Sun Mar 30 18:28:13 2008
