5a24

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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a24 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a24 OCA], [http://pdbe.org/5a24 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5a24 RCSB], [http://www.ebi.ac.uk/pdbsum/5a24 PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a24 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a24 OCA], [http://pdbe.org/5a24 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5a24 RCSB], [http://www.ebi.ac.uk/pdbsum/5a24 PDBsum]</span></td></tr>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Carnivorous plants primarily use aspartic proteases during digestion of captured prey. In contrast, the major endopeptidases in the digestive fluid of the Venus flytrap (Dionaea muscipula) are cysteine proteases (dionain-1 to -4). Here, we present the crystal structure of mature dionain-1 in covalent complex with inhibitor E-64 at 1.5 A resolution. The enzyme exhibits an overall protein fold reminiscent of other plant cysteine proteases. The inactive glycosylated pro-form undergoes autoprocessing and self-activation, optimally at the physiologically relevant pH value of 3.6, at which the protective effect of the pro-domain is lost. The mature enzyme was able to efficiently degrade a Drosophila fly protein extract at pH 4 showing high activity against the abundant Lys- and Arg-rich protein, myosin. The substrate specificity of dionain-1 was largely similar to that of papain with preference for hydrophobic and aliphatic residues in subsite S2 and for positively charged residues in S1. A tentative structure of the pro-domain was obtained by homology modeling and suggested that a pro-peptide Lys residue intrudes the S2 pocket which is more spacious than in papain. This study provides the first analysis of a cysteine protease from the digestive fluid of a carnivorous plant and confirms the close relationship between carnivorous action and plant defense mechanisms.
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Enzymatic and structural characterization of the major endopeptidase in the Venus flytrap digestion fluid.,Risor MW, Thomsen LR, Sanggaard KW, Nielsen TA, Thogersen IB, Lukassen MV, Rossen L, Garcia-Ferrer I, Guevara T, Scavenius C, Meinjohanns E, Gomis-Ruth FX, Enghild JJ J Biol Chem. 2015 Dec 1. pii: jbc.M115.672550. PMID:26627834<ref>PMID:26627834</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5a24" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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Revision as of 07:48, 16 December 2015

Crystal structure of Dionain-1, the major endopeptidase in the Venus flytrap digestive juice

5a24, resolution 1.50Å

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