Journal:JBIC:33

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Parameters characterizing the overall and internal mobility of Zn-bound
Parameters characterizing the overall and internal mobility of Zn-bound
Zmp1 within the Lipari-Szabo model (see static image below). The ‘’Model-Free’’ formalism parameterizes
Zmp1 within the Lipari-Szabo model (see static image below). The ‘’Model-Free’’ formalism parameterizes
-
intramolecular dynamics in terms of an overall tumbling correlation time c, generalized
+
intramolecular dynamics in terms of an overall tumbling correlation time t<sub>c</sub>, generalized
order parameters S<sup>2</sup>
order parameters S<sup>2</sup>
, and of the correlation time for internal motions, which can be
, and of the correlation time for internal motions, which can be
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considered as arising from two components, one describing faster (te<sub>f</sub>) and one slower (te<sub>s</sub>)
+
considered as arising from two components, one describing faster (t<sub>f</sub>) and one slower (t<sub>s</sub>)
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motions (collectively called te<sub>e</sub>), but always faster than te<sub>c</sub>. Motions on intermediate time
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motions (collectively called t<sub>e</sub>), but always faster than te<sub>c</sub>. Motions on intermediate time
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scales (ms to te<sub>s</sub> ), characteristic of exchange processes (R<sub>ex</sub>), may also contribute to
+
scales (ms to t<sub>s</sub> ), characteristic of exchange processes (R<sub>ex</sub>), may also contribute to
transverse relaxation through the fluctuation of the chemical environment of a nucleus.
transverse relaxation through the fluctuation of the chemical environment of a nucleus.
The line reported in the graph of Rex rapresents the average value. The secondary
The line reported in the graph of Rex rapresents the average value. The secondary
structure elements are reported at the top. Residues which experience local mobility (R<sub>ex</sub>
structure elements are reported at the top. Residues which experience local mobility (R<sub>ex</sub>
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or te<sub>e</sub>) are also mapped into the Zmp1 structure in orange and blue respectively. The
+
or t<sub>e</sub>) are also mapped into the Zmp1 structure in orange and blue respectively. The
radius of the atom bonds is proportional to the magnitude of these values. Zinc is
radius of the atom bonds is proportional to the magnitude of these values. Zinc is
represented as orange sphere, binding residues as sticks.
represented as orange sphere, binding residues as sticks.

Revision as of 12:48, 16 December 2015

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  1. REF

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Alexander Berchansky, Jaime Prilusky

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