Sandbox Reserved 1127

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== Structural highlights ==
== Structural highlights ==
PDE5 is a dimeric protein of about 270 amino acids long. The C terminal has the catalytic domain and two Zn2+ binding site and N temrinal is the regulatory domain which includes two the GAF domain a and b. There are thus plural allosteric binding site for cGMP in the Cterminal and the N terminal. cGAMP binds on Gap an allosteric site and promotes the phosphorylation of SER 92 of PKG. This phosphorylation increases the affinity between cGMP and PDE5. Another cGMP can bind to the Gap b which allows the activation of the catalytic site of PDE5. The activated catalytic site is now able to break the phosphodiesteric bond of cGMP :http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2518390/)
PDE5 is a dimeric protein of about 270 amino acids long. The C terminal has the catalytic domain and two Zn2+ binding site and N temrinal is the regulatory domain which includes two the GAF domain a and b. There are thus plural allosteric binding site for cGMP in the Cterminal and the N terminal. cGAMP binds on Gap an allosteric site and promotes the phosphorylation of SER 92 of PKG. This phosphorylation increases the affinity between cGMP and PDE5. Another cGMP can bind to the Gap b which allows the activation of the catalytic site of PDE5. The activated catalytic site is now able to break the phosphodiesteric bond of cGMP :http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2518390/)
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Some residues could be affected by post traductional modifications :
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- phosphorylation : S60, S86, S92, S102, S104, S108, T111, T127, T137, S869
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- acylation : K364
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- ubiquitinylation : K714
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The ubiquitinylation of <scene name='71/719868/K714/1'>K714</scene> (in fushia) and the phosphorylation of are involved in the binding of cGMP to PDE5 catalytic domain.

Revision as of 15:17, 30 January 2016

This Sandbox is Reserved from 15/12/2015, through 15/06/2016 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1120 through Sandbox Reserved 1159.
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Human PDE5 structure and its inhibitor 5R

PDE5 and its inhibitor Sildenafil

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References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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