5ayy

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'''Unreleased structure'''
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==CRYSTAL STRUCTURE OF HUMAN QUINOLINATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH THE REACTANT QUINOLINATE==
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<StructureSection load='5ayy' size='340' side='right' caption='[[5ayy]], [[Resolution|resolution]] 3.09&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5ayy]] is a 9 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4r3x 4r3x]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AYY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AYY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NTM:QUINOLINIC+ACID'>NTM</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4r3y|4r3y]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nicotinate-nucleotide_diphosphorylase_(carboxylating) Nicotinate-nucleotide diphosphorylase (carboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.19 2.4.2.19] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ayy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ayy OCA], [http://pdbe.org/5ayy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ayy RCSB], [http://www.ebi.ac.uk/pdbsum/5ayy PDBsum]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/V9HWJ5_HUMAN V9HWJ5_HUMAN]] Involved in the catabolism of quinolinic acid (QA).[PIRNR:PIRNR006250]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Quinolinate phosphoribosyltransferase (QPRT) catalyses the production of nicotinic acid mononucleotide, a precursor of de novo biosynthesis of the ubiquitous coenzyme nicotinamide adenine dinucleotide. QPRT is also essential for maintaining the homeostasis of quinolinic acid in the brain, a possible neurotoxin causing various neurodegenerative diseases. Although QPRT has been extensively analysed, the molecular basis of the reaction catalysed by human QPRT remains unclear. Here, we present the crystal structures of hexameric human QPRT in the apo form and its complexes with reactant or product. We found that the interaction between dimeric subunits was dramatically altered during the reaction process by conformational changes of two flexible loops in the active site at the dimer-dimer interface. In addition, the N-terminal short helix alpha1 was identified as a critical hexamer stabilizer. The structural features, size distribution, heat aggregation and ITC studies of the full-length enzyme and the enzyme lacking helix alpha1 strongly suggest that human QPRT acts as a hexamer for cooperative reactant binding via three dimeric subunits and maintaining stability. Based on our comparison of human QPRT structures in the apo and complex forms, we propose a drug design strategy targeting malignant glioma.
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The entry 5ayy is ON HOLD until Paper Publication
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Structural Insights into the Quaternary Catalytic Mechanism of Hexameric Human Quinolinate Phosphoribosyltransferase, a Key Enzyme in de novo NAD Biosynthesis.,Youn HS, Gyun Kim T, Kim MK, Bu Kang G, Youn Kang J, Lee JG, Yop An J, Ryoung Park K, Lee Y, Jun Im Y, Hyuck Lee J, Hyun Eom S Sci Rep. 2016 Jan 25;6:19681. doi: 10.1038/srep19681. PMID:26805589<ref>PMID:26805589</ref>
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Authors: youn, H.s., kim, t.g., kim, m.k., kang, g.b., kang, j.y., seo, y.j., lee, j.g., an, j.y., park, K.r., lee, y., im, y.j., lee, j.h., fukuoka, s.i., eom, s.h.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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Description: CRYSTAL STRUCTURE OF HUMAN QUINOLINATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH THE REACTANT QUINOLINATE
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<div class="pdbe-citations 5ayy" style="background-color:#fffaf0;"></div>
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[[Category: Unreleased Structures]]
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== References ==
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[[Category: An, J.Y]]
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<references/>
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[[Category: Seo, Y.J]]
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__TOC__
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[[Category: Fukuoka, S.I]]
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</StructureSection>
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[[Category: Im, Y.J]]
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[[Category: An, j y]]
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[[Category: Kim, T.G]]
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[[Category: Eom, s h]]
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[[Category: Park, K.R]]
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[[Category: Fukuoka, s i]]
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[[Category: Youn, H.S]]
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[[Category: Im, y j]]
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[[Category: Kim, M.K]]
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[[Category: Kang, g b]]
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[[Category: Lee, J.G]]
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[[Category: Kang, j y]]
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[[Category: Kang, J.Y]]
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[[Category: Kim, m k]]
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[[Category: Kang, G.B]]
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[[Category: Kim, t g]]
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[[Category: Lee, J.H]]
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[[Category: Lee, j g]]
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[[Category: Lee, Y]]
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[[Category: Lee, j h]]
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[[Category: Eom, S.H]]
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[[Category: Lee, y]]
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[[Category: Park, K r]]
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[[Category: Seo, y j]]
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[[Category: Youn, H s]]
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[[Category: Transferase]]

Revision as of 15:30, 3 February 2016

CRYSTAL STRUCTURE OF HUMAN QUINOLINATE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH THE REACTANT QUINOLINATE

5ayy, resolution 3.09Å

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