This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3kml
From Proteopedia
(Difference between revisions)
| Line 2: | Line 2: | ||
<StructureSection load='3kml' size='340' side='right' caption='[[3kml]], [[Resolution|resolution]] 3.01Å' scene=''> | <StructureSection load='3kml' size='340' side='right' caption='[[3kml]], [[Resolution|resolution]] 3.01Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3kml]] is a 17 chain structure with sequence from [http://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[3kml]] is a 17 chain structure with sequence from [http://en.wikipedia.org/wiki/Tmv Tmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KML OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KML FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | + | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12243 TMV])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kml OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kml RCSB], [http://www.ebi.ac.uk/pdbsum/3kml PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kml OCA], [http://pdbe.org/3kml PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kml RCSB], [http://www.ebi.ac.uk/pdbsum/3kml PDBsum]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[http://www.uniprot.org/uniprot/ | + | [[http://www.uniprot.org/uniprot/CAPSD_TMV CAPSD_TMV]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 16: | Line 16: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kml ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 26: | Line 26: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3kml" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| Line 33: | Line 34: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Tmv]] |
[[Category: Berger, J M]] | [[Category: Berger, J M]] | ||
[[Category: Dedeo, M T]] | [[Category: Dedeo, M T]] | ||
| Line 41: | Line 42: | ||
[[Category: Cptmvp]] | [[Category: Cptmvp]] | ||
[[Category: Permutant]] | [[Category: Permutant]] | ||
| - | [[Category: Tmv]] | ||
[[Category: Tmvp]] | [[Category: Tmvp]] | ||
[[Category: Tobacco mosaic virus coat protein]] | [[Category: Tobacco mosaic virus coat protein]] | ||
[[Category: Viral protein]] | [[Category: Viral protein]] | ||
[[Category: Virion]] | [[Category: Virion]] | ||
Revision as of 06:38, 7 February 2016
Circular Permutant of the Tobacco Mosaic Virus
| |||||||||||
